Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0230 ATGATGACAATGTTCTTCAATCTTCTTACCATTTTCTTTTTCACTCTCCCTTTTCATTCCTTCTCCTTAAATGCTACATGCCCTCTCAACTTTACCATCCTCACCACCCTTAGCGGTGGCAGAAGACCTTCCTCCTTTGACTCCACCACCCGCTGCCAGTTCATCCGCCAAGCCTTCCGCCTTGTCCAATCTGACTACCTCCGACGTACCACTTTCTTCCTCCCACCTCTCAACTCTTCAGACTCTTGCTGGCAAAGTTTTCAATCCTATGTTAACTCCTTTGAACCCACTTTCAATATTAGATCTTATTGTGGTTTTGAAACTAATTTTATCTCTCAGGGTTGTGTTAATATCACTACTAAGAGTGATTTTGAAGCCTTGGTTACTAGTTCTGTGCTCCAAGATGTTAATCAAAGTTGCAACCAATCACTTGAGAATGGTTCCCCTTGTGCACTTTGTACCACTAGTGTTTCAGCTTTACCTGCTTCTGGTCCTTCCATTGGGAACCTTTCTGATTGTACTGCTTATCCTTCTGTTTATGTTGCTGCTTTCTCTAATCGCTTTGGACCCTCTGACCCTGGCACTGCTAAGTGCTTGTTCTCCCTTGATTTTTCATCTGAGGGTTCTTCTGGTGGTGGTAAGAAAAAGGTTGTTATTGTTGTTGTTTCTGTTGTTTGTGTGCTTGTTTTGTTTTTCGTGATTGTTGGGTATTGGAAATTGAAAAGGAAGAGTAGGGGTATGGGTGGAAATAATACTGAGATGGATTTGGGATCTGGGTTGGATTCAATGGACCAGAGTACTACTTTGATTAGGTTTACAATTGATGATGTTAAGAAGGCAACTAAGAATTTTCATAGGGATAATATAATTGGGAGAGGGGGTTATGGGAATGTGTATAGAGGGGTGATTTCTGATGGGAGTGAGGTTGCGTTGAAGAGGTTTAAGAATTGTTCGGCCGCTGGTGATGCAAGCTTCACTCATGAAGTTGAGGTCATTGCGAGTATCAGGCATGTGAACCTTGTTGCTCTGAGAGGTTATTGTTCTGCGACGACTAAATATGAAGGTTACCAGAGGATTATTGTTACTGATTTGATGAAAAATGGGAGCCTTCATGATCATTTGTTCGGTTCTATGGGGATCAAACTCAGTTGGCCAATTCGTCAACAGGTTGCGCTAGGTACTGCGAGGGGATTGGCTTATTTACATTATGGAGCTCAGCCTTCGATCATTCATAGGGATATTAAAGCTAGTAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTTGCAGATTTTGGATTAGCAAAGTTCAACCCAGAGGGAATGACTCATATGAGCACAAGGGTGGCTGGAACAATGGGATATGTTGCTCCTGAGTATGCATTGTATGGGCAATTGACAGAGAGAAGTGATGTTTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTCTGAGTGGGAGGAAGGCTCTTCAGACGAACAATGATGGCCAACCCTCAGCCTTGACTGATTGGGCTTGGTCATTGGTTAGAACAGGTAGAGCTTTGGATGTGGTTGAAGATGGCATGCCAGAACCTGGTTCACAACAAGTCCTTGAGAAGTATGTGTTAATTGCTGTACTTTGCTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAAACAGCTGATGAATCAGTGCCTTTGATACCGGAACGGCCGATCCCATTTGTTGCTGGGAGGCTTGATATTGAGAGAACTGTGAGCATGAGTGGTTCTGGTCAGCTCTCTAGTCCAACCGGTTATCAACCATATACATTGGAAAGTGATCCACATTCTTCTAATTCTAATTCTAAGGAAGAAGAAAGCTCAAGCCCCAAGATTTTGAATACCCATTGA 1893 0.4253 MMTMFFNLLTIFFFTLPFHSFSLNATCPLNFTILTTLSGGRRPSSFDSTTRCQFIRQAFRLVQSDYLRRTTFFLPPLNSSDSCWQSFQSYVNSFEPTFNIRSYCGFETNFISQGCVNITTKSDFEALVTSSVLQDVNQSCNQSLENGSPCALCTTSVSALPASGPSIGNLSDCTAYPSVYVAAFSNRFGPSDPGTAKCLFSLDFSSEGSSGGGKKKVVIVVVSVVCVLVLFFVIVGYWKLKRKSRGMGGNNTEMDLGSGLDSMDQSTTLIRFTIDDVKKATKNFHRDNIIGRGGYGNVYRGVISDGSEVALKRFKNCSAAGDASFTHEVEVIASIRHVNLVALRGYCSATTKYEGYQRIIVTDLMKNGSLHDHLFGSMGIKLSWPIRQQVALGTARGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNNDGQPSALTDWAWSLVRTGRALDVVEDGMPEPGSQQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETADESVPLIPERPIPFVAGRLDIERTVSMSGSGQLSSPTGYQPYTLESDPHSSNSNSKEEESSSPKILNTH 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0230 630 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0230 630 Pfam SPARK 24 160 IPR043891 -
Lal12g0230 630 SUPERFAMILY Protein kinase-like (PK-like) 266 576 IPR011009 -
Lal12g0230 630 MobiDBLite consensus disorder prediction 587 630 - -
Lal12g0230 630 ProSiteProfiles Protein kinase domain profile. 284 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0230 630 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 15 614 - -
Lal12g0230 630 Pfam Protein kinase domain 284 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0230 630 Gene3D Phosphorylase Kinase; domain 1 253 363 - -
Lal12g0230 630 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Lal12g0230 630 PANTHER OS01G0253100 PROTEIN 15 614 IPR045271 GO:0004714|GO:0006468
Lal12g0230 630 CDD STKc_IRAK 290 559 - -
Lal12g0230 630 Gene3D Transferase(Phosphotransferase) domain 1 365 566 - -
Lal12g0230 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0230 Lal-Chr12 1627133 1629025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0230 4 616 Receptor kinase-like Gene Family AT2G48010 61.874 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lal12g0230 Pkinase 5.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0230 - - gmx:100800760 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0230 12 1627133 1629025 Lal12g0230 12 1627133 1629025 ECH
Lal12g0230 12 1627133 1629025 Lal24g0174 24 1269419 1271653 LSH
Lal1g1940 1 21524105 21526959 Lal12g0230 12 1627133 1629025 PCT
Lal12g0230 12 1627133 1629025 Lal1g1940 1 21524105 21526959 PCT