Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0228 ATGGATAAAATAGCTGATTCTAGTGGTGATTACAAGGAGGATAATAAGGGGAAATCAATTCATCATTCTACAGTTCCTGATGATTTTTCCCTATCTCTGATTGATTTCCCTCCGTACGAACTACCACCGCCTGAGGCTTCACAAAGTTCAAATGAATTTGATTCATTAATGGTAGGATCAAATCAACATAGAGAAGAATCGGAAGTGCATATGCACGAGCTTGTGGATTGGAATGATCCATTTGCAATCAAGGTTGAGATGTTACTGTTGTCTAATTTGCAAGCAGTTTTCCTGGATGCAATAAAGCAGATTGTTGAGCTGGGCTATAGTGAAGATGTAGCTGAGAAGGCCCTTTCAAGGAAGGCCATATACATACAGGATGGAGACCCTGTCTCAAATATTGTTAATGATACATTGAAAGTTTTGAAGGGAGAACATGTTGTCACCCCAGATGTTTTGAAGGGAAAAGATATTGCTACCTCAGACATTGTCTTTGAAAGTTTTCAGCACTTGTTGTGTTACACCATGTTGGAGATGGTCATTCTGCTTTGTGAAGTCAGACCATCCTTAACAATCGGTGAAGCAATGTGGGTATTGCTGATGTGTGACTTGAATGTTTCACTCGCATGTACAGTGGAAGATTCTCTGAATGCTGTTTTCAATGGGGAAAGTTGTATCGGTCCTTCCTCTACCCAATCAAAGTCAGAGGCTCAAAGGTCTGATGTAATTTCAAATTGTAGACCACCAACTTCCCAGGACTCATCCCCCACTCACAAGAAGTGTAAGTCTGAAGAACCTCCGTTTGGGAAGCTCCAAAATTCAGCCAACAATAAAAGTTCTTTTGCTTCAGAAGGGGTAAAGCCTCAGGAAGAGAATGCTTCATTGCCAACTGTTGCAGGTAAACCCTCAGGAACATCAGGGGATGAATGCAAAGCAGGACATTGTTCTAAGCGGCACAATAGAAAAGAAATTGCAGCACTTAGGCAGAAGTTTATCCATATGGAGAAAACGTACAGGGCCCGTGGAAAAGGGGGTTTGAAGACAGAGAAGTTTACAAGTGTTGGTGGTTTGATGATTGAAAAAAGAATCAAACCACCATCTGATATTCATAATCAGCAAGTGAAAAGTGGTCTTTCAAACACGACAAGCAAACAAGGAGTTTATGCATCAGATGCAATGTGCCATGTTTCAACCAATAGTGTATCTACTTTACCTGCAGGAGGTAGCTCCACAGAATTACCAGACATAATATCTTCCCCTGTAGTGAATGCCAATATTTCAGCATCAGAAACAATGTCCAAACCAAAATCTGAGCCAAGCTCCTTTGATGCTCAGAAGATTCTTGATGATTGTGCTGGTATTCCTTATGATGAGTCTTTGGGTAAATATGTCCCACGAGACCAGAAGGATGAACTAATTCTGAAGTTAGTTCCTCGAGTACATTTATTGCAGGGTGAGCTGCAAGGCTGGAGCAGCTGGACAAATCAAAAGGTTATGCAGGTTACTACTAGGCTTGGCAGGCTGCAGCCTGAGATTAAAATGCTGAAAAAGGAGAAGCAAGAAGCTGAAAAGGGTACAAATTTTTTTCAGGAGAATATTGTGAAGAGGATCTCTGAGATGGAGAATGCCATAGAAAATAATAAAAAGCAAATTGAGAATACTACTTCTGTTGCTCTCATGTGCGATGCAGAAAACACATTGCTAAAAAAGGAGTTGGCTGCTGCTAAGTTGTCAGTTGAAATGTCATTGACAAGCCATCAAAAAGCACTAGAGAGAGAGCACATTGCTCTTAAAAAATTAGAGTCATTGGATAGCGAGAATGCTTTGCATCGAGATGAGATCGAGAGAGAGAAGCACAAGTTATCTAACATGCGACAACAACTTGACAAGGAGAAAATTCTTCTAGTCAGGTTTGAGGGTCGGGTGGAAAAAGAGAGAGCAGGGACAGAAAAGGTCCTTAAACATGCTGCATCTATCATAGAGGAAAGGAAACAGCTAGCAGAACACACAAAAGCTGAGGAAGATAAGATAAGAAAAAAGGCAGCCGATAACTTGCAGAAATATATAGAGGTGATTGCGAATCTTGAAACACACTTGGAAGAAATAAAACAAAAATTAGAGTCTGAAAAAATTGCAGCACTTCATAAACGTGAGCCGATGGGGAGCAAGAAATGGGGTTCGTTGCAGACCATGGTGAGCTGCCAAGCCAAATATGCAGCTGGAAATTTGAGGCGGGAGCATGAGTGTGTCATGTGCCTATCTGAGGAGATGTCAGTAGTTTTTCTTCCATGCGCACATCAGGTTGTGTGTGCAGAATGCAACAAGCTCCATGAGAAACGAGGAATGAAGGATTGCCCTTCGTGTAGGGCTCCGATCCAACACAGGATTCATGCTAGATTTGCTGGTCAATAG 2412 0.4154 MDKIADSSGDYKEDNKGKSIHHSTVPDDFSLSLIDFPPYELPPPEASQSSNEFDSLMVGSNQHREESEVHMHELVDWNDPFAIKVEMLLLSNLQAVFLDAIKQIVELGYSEDVAEKALSRKAIYIQDGDPVSNIVNDTLKVLKGEHVVTPDVLKGKDIATSDIVFESFQHLLCYTMLEMVILLCEVRPSLTIGEAMWVLLMCDLNVSLACTVEDSLNAVFNGESCIGPSSTQSKSEAQRSDVISNCRPPTSQDSSPTHKKCKSEEPPFGKLQNSANNKSSFASEGVKPQEENASLPTVAGKPSGTSGDECKAGHCSKRHNRKEIAALRQKFIHMEKTYRARGKGGLKTEKFTSVGGLMIEKRIKPPSDIHNQQVKSGLSNTTSKQGVYASDAMCHVSTNSVSTLPAGGSSTELPDIISSPVVNANISASETMSKPKSEPSSFDAQKILDDCAGIPYDESLGKYVPRDQKDELILKLVPRVHLLQGELQGWSSWTNQKVMQVTTRLGRLQPEIKMLKKEKQEAEKGTNFFQENIVKRISEMENAIENNKKQIENTTSVALMCDAENTLLKKELAAAKLSVEMSLTSHQKALEREHIALKKLESLDSENALHRDEIEREKHKLSNMRQQLDKEKILLVRFEGRVEKERAGTEKVLKHAASIIEERKQLAEHTKAEEDKIRKKAADNLQKYIEVIANLETHLEEIKQKLESEKIAALHKREPMGSKKWGSLQTMVSCQAKYAAGNLRREHECVMCLSEEMSVVFLPCAHQVVCAECNKLHEKRGMKDCPSCRAPIQHRIHARFAGQ 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0228 803 MobiDBLite consensus disorder prediction 229 314 - -
Lal12g0228 803 Pfam Zinc finger, C3HC4 type (RING finger) 746 794 - -
Lal12g0228 803 Coils Coil 512 557 - -
Lal12g0228 803 MobiDBLite consensus disorder prediction 1 25 - -
Lal12g0228 803 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 11 801 - -
Lal12g0228 803 Coils Coil 678 712 - -
Lal12g0228 803 MobiDBLite consensus disorder prediction 269 287 - -
Lal12g0228 803 MobiDBLite consensus disorder prediction 1 23 - -
Lal12g0228 803 SUPERFAMILY RING/U-box 744 796 - -
Lal12g0228 803 Coils Coil 600 634 - -
Lal12g0228 803 MobiDBLite consensus disorder prediction 229 256 - -
Lal12g0228 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 799 IPR013083 -
Lal12g0228 803 PANTHER OS05G0141500 PROTEIN 11 801 IPR046934 -
Lal12g0228 803 Pfam Family of unknown function (DUF6592) 92 212 IPR046527 -
Lal12g0228 803 ProSiteProfiles Zinc finger RING-type profile. 749 789 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0228 Lal-Chr12 1616100 1620332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0228 - - lang:109335169 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0228 12 1616100 1620332 Lal12g0228 12 1616100 1620332 ECH
Lal12g0228 12 1616100 1620332 Lal13g0197 13 1241040 1243518 LSH