Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0204 ATGAGAGAAGGTTTGAGATCTCGAACTCGATTGGGTAAGGATTCTAGTGCTGGAGGAGTTTTGGAAAGGGGTGGATTGGAAAAGGAGAGTTTTGATTTGAATGTTGAGGGTTCTTTGGCGCCGCAGGAAGATGCATTGAACTTAACGACTGAGAAGAAGGACGATGTTGACTGTGTGGTGGAAAAAGAATGTTGTTTTGATTTGAATGAAAGTCCTGGTGGGAATGCTGACTTAACTGAGGATGTGAACGACAAGGGTTGTAGTAGTCGTGGGGGTGGGAGTAGTGTTCGAGATGCTGATGTTGGGACAGAGGTGGATAAAAATGAAGCGAACGAGAAGGGTTGTTGTAGTGGTGGGGGTAGCTTTAAAAAAGCTGATGCTGAGACAGAGGTGAATACAAATGAAGGTTCAAGTGATTGTGTGTTGATTGGTGGTCGAGTTTTGCGCTCAAGGTCTAAGAGGGGAGATGATAACAAATCTTGTAAAGGGGAGAATAGTGGTGCCCTTCATGGTGAAAGTAATGAAAGTGGTGTGCTTGAGAGGATAGAATTTACGAAGGAATATGATGAAGCTGATGAGTATGTCAGCGAGGGAACTGTGAATGAAAAGGATAAGCTGAAAAGGAAAGGGCACAAGGGGAATTTGAAAAGGAAGCGTGGTAGACCTCCCAAAATGAAGTTGGAAGAGGAAGCTCAATTTGTTGATCAGTTGCCACGTAAGCGTGGGAGGCCTCCCATAATAAGGTTGAACGAGCAAGACCAATCCGTTGATCAGTTGACACATAAGCGTGGAAGACCTCCCAAGGCTGGCATTCAAAACCAGCTCCTAAAAATGGTGCATAATAGAAAAGGAAAGATGGGTTTCCGTAAAGGTAAAAAAGGTTTAACTGCCAGATATAATGCAACTATGAATTCTATTTCTGATACACACCCAGGGAGAGCTTCCGAGAGAGAGTTAGAAAAGAAGGGGGTTTCTCCAGTAAAGAAGAGTAAATTTGTGAAGGTTTTGAATACTGAGCACAATGAAGTAGCGTCACCAGTGACATCAAATGCAGTGAAAGCCCCTGTTGGTGATAAAAGTAGAAGAAACAAAGAAAAACAGTTGGTGAGGGAACAAATAATGGAAAGGCTCTCAGCTGCAGGCTGGACAGTTGATTATAGACAAAGGAACGGAAGAGAGTACCGTGATGCGGTGTATGTTAGTCTAGATGGAAAGACACACTGGTCAATCACTTTGGCCTACAATAGGCTTAAAAACCACTACGAAGCTGGTGATGGTGAAGGTAAGGTGTATGGACCAGGTTTCAAATTTACTCCAATACCAGAAGAGGATTACAAAATACTAACTAAGGTAATCAGCAAAGAAAGAAATGATAAAAATAAATCGAGGCCAAAATGGGGGAATGGTGAAGAGGCAGTTGATAGAGTCAATAAAAAGTATAAAAAAGAAAGACTGGGTTCTGGTGCAGGCAAGGGGAAAATTAAAAGGAAACGGTTACTTCACAAGGAGGACAATGCGACACCTAGCAAGATGTCAATTATGGTCAGGGATCATAAGCGGCACAAAACGCAAAACAAGAAGCGATGTGCTCCACTGGTTCGCAATGCAGAGGAGGAGATAGATTCAGAAACTAATGGCTATGTACCATACAGTGGAAAGCGAACTGTGCTTGCCTGGATGATTGATTTGGGAACGATTGTGCAAAACCAGAAGGTTCATTATATGCATAATAGAAGGGGGGTTTCACCGATGCAGGGTAGGATCACAGGTGATGGCATTCATTGTGGTTGCTGTAACGAAATAGTAATGATTTCAGACTTCGAAGCTCATGCAGGATGCAAACTCTCAGACCCACTTAAAAATATATGTATAGAGGATGGAACTTCTCTCTTACAATGCATGCTAGATTCATGGGACAAATTAGATGAATTTGAACGTAAAGGTTTTCATTTTGTTGATACTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTATGTGGTGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCACCAAAGCTGCCTGGATATAAATAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGCTGAAGGAAGTTCAAACCAAAGGGACAGCAATAGTGGTTTTACCGTGTCTACATTATTGACATGCCACTTATGCCAGGAAAAATATCATAGGTCCTGTACTGAGGCAAATGGTGCCATGACGGATGACTCCAAAGATCCCATTTTTTGTGGAAACAAATGTGATCAGTTATATGAGAGACTCGAAATGCTTCTTGGGGTTAAACATGAAACTGAAGATGGGTTTTGTTGGTCTTTTATTCGGCGGTCAGATGTTGGTTTTGATGCTTCTGAGATAAAACCTGAAATAGTTCAATGTAATTCCAAGCTAGCTGTTGCATTAACAATAATGGATGAGTGCTTCATGCCATATATTGACCATAGAAGCGGGACAAACTTGATTCACAGTATTCTATATAATTGTGGATCGAACTTCAAACGGCTTAACTTCAGTGGATTTGTTACTACAATTCTAGAGAGAGGTGATGAGGTCATATCTGCAGCAACTATCAGGATCCATGGAAACCAACTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGACAAGGAATGTGCCGCCGACTTCTAAATGCCATCGAATGTGCACTGAGCTCTTTAAATGTTGATTTATTGGTCATACCAGCCATCTCAGAACTCAGAGAAACCTGGATGTCTGTTTTTGGGTTTGAACCACTTGACTTGACAAGCAAGAAATTAATAAATAACATGAATCTTGTGGTGTTCCCTCATGTAGATATGTTACAGAAAAAGATACATAACCATAAATTAGCTGGTGAGAATCTGATTCCTTTAGAAGTTTCTAATCTTCAGAAGAGTCATACAATACACAAGGTAGCTAATTTTTGTGATGGGGCAGGCTCATCTGGATCTGACTTGATCAATTCTGCTGGGATCCCTCCCTCTAATGCATGTCAGATAAATGAATCTGGCTATCAGCCCCCTGAGGGATCATTGAATGAGGCAGTCGACATCACTAGCAACACTATAGATCATGGTAAATCTCCAGATGATGTCACATGTCCAGTTGTATGTCAGGCAATTGATGAAAGCATGGCAGCGGAAGCTGCAGATGCCCATGATTGTGCGAGTGATATTTCTTACCGAGCTCAAGACAAGAGTATCAGTTATAATTGTACCAGACCATACCATGATCAGAAGTCCATAGATTTAGATGGCCAATTGAGTAAGTGCTGTGTTACTTATGAGGAAAAGCAATGTCTCGGCGTGTCTCATATTAGCACTGAAGCTGCTGAAGAACATTCTGCTGACAGTATTCACCATGATTTACATAAGATGTCTGACAGCTGTGAACTGAAAGGCAAAAATGATTGTGTTCAGGCGTACTTCACAGGATCAGAAGTACAAACTGAAGCTGTTAATGGTTGTGCTTCTCATTGTAGACCCGACACCAACAATGATTGTTCCGCCAGTGAAGCAGTTCTTACAACAGATGTCACGAAGAACATTACTGAAGATCTGCCTGCGGTAAATTGTGAAAAAGGTTCCAGTATGGTTAGGGTACCAAATGCGAATGAAGCAAAAATATGTTCAGTCAAAGCACCTAACCTCCAGACAAACATAAACCCTGAATATTGCCAATCCATAGTGGTATCTTCAGGTTTTTGTGAGACGATTGCTGATGGTGTCAACAAGAGGAATGAAGCACCCAGGGTAGCTGAGGTCAATTTCCTTCTTGCTGATAAAGGCATGGTTCCTGATGATAAGCCTGGTATTGCAGGGTCTTCAGAGTTAGCTGAGCCTGATTTGCAGCTTGATCAAACTGCACAGAGCAACCCTCCATCGTTGTGTAGTCCAAACACTGCTTCTGCCATGTGTCCTCATTGGGCATCTACTGACAGTACTTCGTGTGGTAGTACGGAGGCAATAGTTTTGTCAAACCAAGCCAGTTGA 4050 0.4215 MREGLRSRTRLGKDSSAGGVLERGGLEKESFDLNVEGSLAPQEDALNLTTEKKDDVDCVVEKECCFDLNESPGGNADLTEDVNDKGCSSRGGGSSVRDADVGTEVDKNEANEKGCCSGGGSFKKADAETEVNTNEGSSDCVLIGGRVLRSRSKRGDDNKSCKGENSGALHGESNESGVLERIEFTKEYDEADEYVSEGTVNEKDKLKRKGHKGNLKRKRGRPPKMKLEEEAQFVDQLPRKRGRPPIIRLNEQDQSVDQLTHKRGRPPKAGIQNQLLKMVHNRKGKMGFRKGKKGLTARYNATMNSISDTHPGRASERELEKKGVSPVKKSKFVKVLNTEHNEVASPVTSNAVKAPVGDKSRRNKEKQLVREQIMERLSAAGWTVDYRQRNGREYRDAVYVSLDGKTHWSITLAYNRLKNHYEAGDGEGKVYGPGFKFTPIPEEDYKILTKVISKERNDKNKSRPKWGNGEEAVDRVNKKYKKERLGSGAGKGKIKRKRLLHKEDNATPSKMSIMVRDHKRHKTQNKKRCAPLVRNAEEEIDSETNGYVPYSGKRTVLAWMIDLGTIVQNQKVHYMHNRRGVSPMQGRITGDGIHCGCCNEIVMISDFEAHAGCKLSDPLKNICIEDGTSLLQCMLDSWDKLDEFERKGFHFVDTAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDINKFPSGDWHCIYCCCKFCGLAEGSSNQRDSNSGFTVSTLLTCHLCQEKYHRSCTEANGAMTDDSKDPIFCGNKCDQLYERLEMLLGVKHETEDGFCWSFIRRSDVGFDASEIKPEIVQCNSKLAVALTIMDECFMPYIDHRSGTNLIHSILYNCGSNFKRLNFSGFVTTILERGDEVISAATIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIECALSSLNVDLLVIPAISELRETWMSVFGFEPLDLTSKKLINNMNLVVFPHVDMLQKKIHNHKLAGENLIPLEVSNLQKSHTIHKVANFCDGAGSSGSDLINSAGIPPSNACQINESGYQPPEGSLNEAVDITSNTIDHGKSPDDVTCPVVCQAIDESMAAEAADAHDCASDISYRAQDKSISYNCTRPYHDQKSIDLDGQLSKCCVTYEEKQCLGVSHISTEAAEEHSADSIHHDLHKMSDSCELKGKNDCVQAYFTGSEVQTEAVNGCASHCRPDTNNDCSASEAVLTTDVTKNITEDLPAVNCEKGSSMVRVPNANEAKICSVKAPNLQTNINPEYCQSIVVSSGFCETIADGVNKRNEAPRVAEVNFLLADKGMVPDDKPGIAGSSELAEPDLQLDQTAQSNPPSLCSPNTASAMCPHWASTDSTSCGSTEAIVLSNQAS 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0204 1349 Pfam Tify domain binding domain 586 635 IPR032308 -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 1 52 - -
Lal12g0204 1349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 789 IPR013083 -
Lal12g0204 1349 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 804 964 IPR000182 GO:0016407
Lal12g0204 1349 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 76 1189 - -
Lal12g0204 1349 SUPERFAMILY FYVE/PHD zinc finger 656 709 IPR011011 -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 190 223 - -
Lal12g0204 1349 CDD PHD1_AIRE 664 703 - -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 304 323 - -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 190 208 - -
Lal12g0204 1349 SMART AT_hook_2 216 228 IPR017956 GO:0003677
Lal12g0204 1349 SMART AT_hook_2 238 250 IPR017956 GO:0003677
Lal12g0204 1349 SMART AT_hook_2 260 272 IPR017956 GO:0003677
Lal12g0204 1349 ProSiteProfiles Zinc finger PHD-type profile. 661 706 IPR019787 -
Lal12g0204 1349 PANTHER PHD FINGER PROTEIN 12 76 1189 IPR042163 GO:0003714|GO:0045892
Lal12g0204 1349 SMART PHD_3 663 704 IPR001965 -
Lal12g0204 1349 SMART PHD_3 705 765 IPR001965 -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 151 178 - -
Lal12g0204 1349 MobiDBLite consensus disorder prediction 70 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0204 Lal-Chr12 1468077 1477187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0204 214 970 PHD Transcription Factor Family AT5G36670 39.693 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0204 - - lang:109346644 2381.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0204 12 1468077 1477187 Lal12g0204 12 1468077 1477187 ECH
Lal12g0204 12 1468077 1477187 Lal13g0175 13 1099599 1107020 LSH