Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0203 ATGTTGAAACACTGTTTCTCAAAGTTCAATGCAGATGAATCAGAATCAACAACAATCCCCACTGCCACTGTTGATTATCAAAATAATGGTTATGATGAAAACCCTCCATGTCCAACCTCACCATTGATGAAGAACTTCAACTCTCTCTATGAACATGAACCTGAAGTAGTGACCGCTGATTTAGCAACTGCTTTGGCCTCCCAACGGTTCTTTTTCTCTTCACCTGGCCACTCCAACTCACTCATTGAATACACTACTACTTCATCATCTTTGGTGGGTGAGAAGAATAAGAATAAGAAGAAGAATGTGTTGTTATTCAAGGGAAGTGTGGCGTTGCAAACTTACTCATCGGATCCTTACTTGGACTTCCGGCGATCCATGGAGGAAATGGTGGAGGCGCAACCTGAGCTCATGGATGTTAACTCCAATTGGAATGTGTTACATCAGCTTCTACTTTCTTATCTTGCCTTGAATCCAAAGACCACTCACAAATTCATTCTAACTGCTTTTTCTGATCTCCTTATTTCTTTGATGGATGTTAAAGTTTCATCAATCTAA 558 0.4032 MLKHCFSKFNADESESTTIPTATVDYQNNGYDENPPCPTSPLMKNFNSLYEHEPEVVTADLATALASQRFFFSSPGHSNSLIEYTTTSSSLVGEKNKNKKKNVLLFKGSVALQTYSSDPYLDFRRSMEEMVEAQPELMDVNSNWNVLHQLLLSYLALNPKTTHKFILTAFSDLLISLMDVKVSSI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0203 185 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 58 179 IPR038933 GO:0045892
Lal12g0203 185 PANTHER TRANSCRIPTION REPRESSOR OFP12 58 179 - -
Lal12g0203 185 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 110 178 IPR006458 -
Lal12g0203 185 Pfam Transcriptional repressor, ovate 116 177 IPR006458 -
Lal12g0203 185 ProSiteProfiles OVATE domain profile. 112 176 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0203 Lal-Chr12 1466341 1466898 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal12g0203 Ovate 6.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0203 - - gmx:102660213 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0203 12 1466341 1466898 Lal12g0203 12 1466341 1466898 ECH
Lal12g0203 12 1466341 1466898 Lal13g0174 13 1097827 1098411 LSH