Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0192 ATGTTCCCTGCAGTTATGTCCAATTCCACTTCTATATCAGAAGAAGCCAGTGTACTCTCTTCTGGTGCAAGAATTCATCAGAACTTGGGTGGATTAAATAACTTAGTCTCATCCATTTCTCCTCAGCAGCAGCCTCAACAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAACCCAGACCCAGATGCTGAAGTGATTGCCTTATCTCCAAAGACCCTTCTAGCCACAAACAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAAAGGGACCAGAATCTTCAGCTTCATAGGAGAGGTCATAACCTGCCATGGAAGCTGAAGCAAAGGAGCAACAAAGAGGTCAAAAAGAAAGCATACGTTTGCCCTGAGCCTTCATGTGTTCACCACAACCCATCACGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAACCAAATAGCCAACAACACCACAAACCCATTACCCCAATCTCTCTTCCTTTTCCCATCTCAACAACAAAACTTCCAAAACCAATTCACCATCCTCAATCCATGGGACCCTTCACATGAAAACCCTAACCCTAACAACATTGCCACTGCTCTCCACAACATCAAGCCTGAAGCTCAGAACTTTCATATACCCCACAACAACACCAACAATAGCCCTTCATTTCTTCAACACTCCAAGAGCATAATAACTTCCTCACCTTTTGGGAACCTCTACATGCACTCACAAAACTCCTCAAACTCTGTCACATCAGCATATCTCTCAGCCACTGCATTGCTCCAGAAAGCAGCAACCATTGGTGTTGCTGCCATCACAGGCCCTGATGCTCCCACCACCGCATCCGTTGGTGGTGGCCAACAACACCATGTGACTCATCACGTGACTCAACTCAGCATGGGCGAGTTTGGAACAGTGGCTCATCTCAACAACTCTGTGATACCTGATCATCATCGCTACATCAACATGAAGGGACTAAACAAGAATGAGACAAGGGACTTTCTGGGGCTAGCTAAGGGCGGCGAAGGAGACAGTGGAGGAAATGCGGTTGAAGTTAGTATTAACGTGAAGGATATGCTAACGTTCACCGGAAACGTAGAGTACCAGAACCACCACCAACCTTATGAGCACCATCTCCACTCATCGCAGTTCAAGTCCCGACAACAAGGTGGTTTTGGATTCCTTGGGACAACTACTGCCCCTGAGTCATGGGGGAATTGTTAA 1422 0.4564 MFPAVMSNSTSISEEASVLSSGARIHQNLGGLNNLVSSISPQQQPQQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQIANNTTNPLPQSLFLFPSQQQNFQNQFTILNPWDPSHENPNPNNIATALHNIKPEAQNFHIPHNNTNNSPSFLQHSKSIITSSPFGNLYMHSQNSSNSVTSAYLSATALLQKAATIGVAAITGPDAPTTASVGGGQQHHVTHHVTQLSMGEFGTVAHLNNSVIPDHHRYINMKGLNKNETRDFLGLAKGGEGDSGGNAVEVSINVKDMLTFTGNVEYQNHHQPYEHHLHSSQFKSRQQGGFGFLGTTTAPESWGNC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0192 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 443 - -
Lal12g0192 473 Gene3D Classic Zinc Finger 148 216 - -
Lal12g0192 473 Gene3D Classic Zinc Finger 58 127 - -
Lal12g0192 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Lal12g0192 473 MobiDBLite consensus disorder prediction 34 51 - -
Lal12g0192 473 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Lal12g0192 473 SMART c2h2final6 79 101 IPR013087 -
Lal12g0192 473 SMART c2h2final6 155 175 IPR013087 -
Lal12g0192 473 SMART c2h2final6 120 150 IPR013087 -
Lal12g0192 473 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lal12g0192 473 MobiDBLite consensus disorder prediction 34 63 - -
Lal12g0192 473 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lal12g0192 473 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0192 Lal-Chr12 1378330 1382235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0192 27 458 IDZ Gene Family AT4G02670 48.984 5.88e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0192 zf-C2H2 0.0047 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0192 K25870 - gmx:100780056 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0192 12 1378330 1382235 Lal12g0192 12 1378330 1382235 ECH
Lal12g0192 12 1378330 1382235 Lal24g0144 24 1060902 1064914 LSH