Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0183 ATGGCAAATCACCCTTCTCATGTGGCCCCCACCGACGACTTCCTTGAACAAATCCTCTCCCTCCCTACTTTCCCTTCCTCCGATTCCCCTTTCCCATCCACCGACTCTTCTTCCTTCGCCGCCGCCGTGTCTTCTCCGCCACCTATGATGCTACAACTCAACTCCTCCGATAACCAAGCTCCGTTTCATTCACCACCTGTCTACCACTTAGGCTTGAGTTTGGAACAAGCTGAAGGAGCCTTCATCAAGCCTGATGATGCTTCTCTAACTGCTAACCGCTATCGCGATGATGTTAGACCTAAAAATGTTTTTCGTGGGCAACCCATGCCGACTAACGTTCCTACTGCTCCACACCCACCAGCAATGCGACCCAGAGTGCGAGCTAGAAGGGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGACTGATAAAGCTGTCATGCTTGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGCCGATTGGGCGGAGCTGGTGCAGTTGCACCACTGGTAACTGACATCCCATTGTCATCGGTCGAGGAGGAAGGAAACCAACCAGCTTGGGAGAAGTGGTCAAATGATGGTACAGAAAGGCAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCATCAGACACCTCTAGCATAGTTAAGCCTGAAACTAATCCTCCTTCATAG 852 0.4906 MANHPSHVAPTDDFLEQILSLPTFPSSDSPFPSTDSSSFAAAVSSPPPMMLQLNSSDNQAPFHSPPVYHLGLSLEQAEGAFIKPDDASLTANRYRDDVRPKNVFRGQPMPTNVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDKAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPETNPPS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0183 283 MobiDBLite consensus disorder prediction 101 136 - -
Lal12g0183 283 Pfam Helix-loop-helix DNA-binding domain 137 181 IPR011598 GO:0046983
Lal12g0183 283 MobiDBLite consensus disorder prediction 19 43 - -
Lal12g0183 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Lal12g0183 283 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 272 - -
Lal12g0183 283 MobiDBLite consensus disorder prediction 20 43 - -
Lal12g0183 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 191 IPR036638 GO:0046983
Lal12g0183 283 SMART finulus 138 187 IPR011598 GO:0046983
Lal12g0183 283 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 272 - -
Lal12g0183 283 Gene3D - 127 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0183 Lal-Chr12 1281693 1285913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0183 62 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.881 3.07e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal12g0183 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0183 - - gmx:100793177 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0183 12 1281693 1285913 Lal12g0183 12 1281693 1285913 ECH
Lal12g0183 12 1281693 1285913 Lal13g0705 13 4578794 4583255 ECH
Lal12g0183 12 1281693 1285913 Lal24g0541 24 3816750 3821134 ECH