Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0182 ATGGAGAACTCATTTGGATGCTATGAAACAAAGATGAATCTCAAGGACACAGAGTTAAGGTTGGGATTGCCCGGAACCGATGACAAGGAGGAAAAATGTTTAAGCAATTACTCTGTTGTCAGAAGCAACAACAAGAGATCTTCACCAGAGTCCAGTCATCAAGAAGAATCCATAAACAAGAATGGTCCTATTAGCACATGTGATGATGACGAACATACTTATGTCCCACCTTCAAAGGAACAAGTAGTGGGATGGCCACCAATTAGATCTTACAGGAAGAACAATTTACAATACAAGAAGGATGAAGAGGTTGATGGGTCTGGGAAGTATATAAAAGTGAGCATGGTTGGTGCACCTTATTTGAGGAAGATAGATCTCATGGTTTATAAGAGTTACCCAGAACTCCTAAAGGCCTTGGAGAATATGTTGAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGATATAATGGATCTGAATATGTTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGCACATGTTCATATCCTCCTGCAAAAGACTGAGAATTATGAAAGTATCAGAAGGAAAAGGAGTTGGGCTGTTTTTGACCCAAAAAACAAAGCAGGACCATATACATATTCAAAACAATTCCCTATGCTTGGGTTCTACAACCAAGCACCTCACCTTTGTGCAAGGTCATATTTAA 714 0.3964 MENSFGCYETKMNLKDTELRLGLPGTDDKEEKCLSNYSVVRSNNKRSSPESSHQEESINKNGPISTCDDDEHTYVPPSKEQVVGWPPIRSYRKNNLQYKKDEEVDGSGKYIKVSMVGAPYLRKIDLMVYKSYPELLKALENMLKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWHMFISSCKRLRIMKVSEGKGVGLFLTQKTKQDHIHIQNNSLCLGSTTKHLTFVQGHI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0182 237 Pfam AUX/IAA family 17 201 IPR033389 -
Lal12g0182 237 PANTHER AUXIN-INDUCED PROTEIN 6 202 - -
Lal12g0182 237 Gene3D - 102 206 - -
Lal12g0182 237 MobiDBLite consensus disorder prediction 34 67 - -
Lal12g0182 237 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 202 IPR003311 GO:0005634|GO:0006355
Lal12g0182 237 ProSiteProfiles PB1 domain profile. 108 200 IPR000270 GO:0005515
Lal12g0182 237 SUPERFAMILY CAD & PB1 domains 106 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0182 Lal-Chr12 1277332 1278630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0182 99 199 B3 DNA Binding Superfamily AT2G46530 35.644 2.61e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal12g0182 AUX_IAA 8.1e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0182 K14484 - gmx:100780752 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0182 12 1277332 1278630 Lal12g0182 12 1277332 1278630 ECH
Lal24g0626 24 4578218 4579818 Lal12g0182 12 1277332 1278630 ECH
Lal12g0705 12 5301882 5303525 Lal12g0182 12 1277332 1278630 ECH
Lal13g0156 13 1001813 1003956 Lal12g0182 12 1277332 1278630 ECH
Lal12g0182 12 1277332 1278630 Lal13g0156 13 1001813 1003956 LSH