Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0181 ATGGAAGTAGTAGGCCTGAAGAAGATGGTGTTTGAGGAAACTGAACTCAGGCTGGGACTACCTGGAAATGGATCAGCCAACACATCTATTGAAGGAGAAGTTGTGATGAGGAAGAGAAGCTTTTGTGAAACTGAGAAAACCACCATTGATTTGATGCTTAACCTCTCTTCAAAGGAAGCAACTTCAGATCCAAAAGATGATAAGTCCACCATGCTTTTGCCTTCTGACCATGACAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCGGTGCGGTCGTACCGGAAAAACATGTTGGCAGTGCAAAAGAGCGGCGGAGAGGAGAGCAGCCCTAATAATGTAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAGGTGGACTTGAAGATGTACAACAGTTATCCTCAGCTCTCTAATGCCTTAGGCAAAATGTTTAGTTCCTTCACCATTGGAAATTGTGAATCCCAAGGCATGAAGGATTTTATGAATGAGAGTAAGCTGATGGATCTCTTAAACAGCTCCGATTATGTTCCAACCTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAGGCAATTGGACTAGCACCAAGAGCCATGGAAAAATACAAGAATAGAAGCTACTAG 705 0.4496 MEVVGLKKMVFEETELRLGLPGNGSANTSIEGEVVMRKRSFCETEKTTIDLMLNLSSKEATSDPKDDKSTMLLPSDHDKPPAKAQVVGWPPVRSYRKNMLAVQKSGGEESSPNNVSFVKVSMDGAPYLRKVDLKMYNSYPQLSNALGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKYKNRSY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0181 234 PANTHER AUXIN-INDUCED PROTEIN AUX28 6 226 - -
Lal12g0181 234 Gene3D - 110 227 - -
Lal12g0181 234 ProSiteProfiles PB1 domain profile. 115 215 IPR000270 GO:0005515
Lal12g0181 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 226 IPR003311 GO:0005634|GO:0006355
Lal12g0181 234 SUPERFAMILY CAD & PB1 domains 110 214 - -
Lal12g0181 234 MobiDBLite consensus disorder prediction 57 85 - -
Lal12g0181 234 MobiDBLite consensus disorder prediction 60 74 - -
Lal12g0181 234 Pfam AUX/IAA family 13 224 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0181 Lal-Chr12 1262558 1265160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0181 116 234 B3 DNA Binding Superfamily AT3G61830 29.365 5.27e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal12g0181 AUX_IAA 1.8e-82 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0181 12 1262558 1265160 Lal12g0625 12 4528620 4532036 ECH
Lal12g0181 12 1262558 1265160 Lal13g0706 13 4592041 4595435 ECH
Lal12g0181 12 1262558 1265160 Lal12g0181 12 1262558 1265160 ECH
Lal24g0627 24 4599132 4602584 Lal12g0181 12 1262558 1265160 ECH
Lal12g0706 12 5313586 5316455 Lal12g0181 12 1262558 1265160 ECH