Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0176 ATGGAGGAGGTTGAATTAGCTAACAGAGCAGCTGTTGAAAGCTGTCATAGAATTCTTAATATGTTGTCTCAGCCCAAGGACCAGAATCAGCAAAGGAATTTAATGGTGGAAACTGGTGAAGCAGTGGGGAGGTTCAAAAAAGTTGTGTCCTTACTACACAATGGTTTGGGTCATGCTAGAGTCAGAAAGCTTAAAAAACTCCAACTCCCCTTTTCCGAAAGTATCCTCTTGGACAACCCAAATTGCCAAAGCAAAACAACCAACCACTCTAAAAATCTTCACTTCCCCCTAACCCAAACCAGCTTTCCTGATAATTCAATTCAGGAATTTGACTCAAGTGTTAGGAGCACACTCTCTCTTGGAAACCCTTCTTTGGAATTGAACTCAAGTGGGAAAACTCCTATGCAGCTTGTACAACAAGCTTCGTCTGCGCACTATCAGTTCCTTCAGCAGCAGCAACAGCAACAAAGGTTGATAGTGCAGCAGCAACAAATGAAACATCAAGCGGAAATGATGTACCGGAGGAACAATAGCAGCAGCATAAACCTGAACTTTGACAGCACTAGCTGCATGCCCACAATGTCATCTACCAGGTCTTTCATTTCTTCCTTGAGTATAGACGGAAGCGTAGCGAACGTGGATGGAAGCACCTTCCACTTAATTGGAGCTCCACCACACTCTTCAGATCAGAATTCACAACAGCATAAGAGAAAATGTTCTGCCAGAGGCGACGAGGGCAGCATGAAATGTGGGAGTAGTTCTAGATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCCGATGACTATTCCTGGCGGAAGTATGGGCAGAAGCCTATCAAGGGCTCTCCTCACCCTAGGGGATATTATAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAAAGGTGTTTGGAAGAGCCTACTATGCTGATTGTTACCTATGAAGGCGAGCATAACCACCCGAAACTACTAGCACAATCTGCAAATGCATGA 1056 0.4508 MEEVELANRAAVESCHRILNMLSQPKDQNQQRNLMVETGEAVGRFKKVVSLLHNGLGHARVRKLKKLQLPFSESILLDNPNCQSKTTNHSKNLHFPLTQTSFPDNSIQEFDSSVRSTLSLGNPSLELNSSGKTPMQLVQQASSAHYQFLQQQQQQQRLIVQQQQMKHQAEMMYRRNNSSSINLNFDSTSCMPTMSSTRSFISSLSIDGSVANVDGSTFHLIGAPPHSSDQNSQQHKRKCSARGDEGSMKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLLAQSANA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0176 351 SMART WRKY_cls 283 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0176 351 Gene3D WRKY domain 268 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal12g0176 351 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0176 351 Pfam WRKY DNA -binding domain 285 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal12g0176 351 SUPERFAMILY WRKY DNA-binding domain 281 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal12g0176 351 MobiDBLite consensus disorder prediction 224 244 - -
Lal12g0176 351 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 350 - -
Lal12g0176 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 350 IPR044810 GO:0003700
Lal12g0176 351 Pfam Plant zinc cluster domain 236 281 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0176 Lal-Chr12 1237421 1240113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0176 1 348 WRKY Transcription Factor Family AT2G30590 55.959 8.34e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal12g0176 WRKY 4.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0176 - - gmx:100170681 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0176 12 1237421 1240113 Lal12g0176 12 1237421 1240113 ECH
Lal12g0176 12 1237421 1240113 Lal13g0150 13 967017 969914 LSH
Lal12g0176 12 1237421 1240113 Lal24g0138 24 1000127 1003131 LSH