Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0175 ATGATGCAAAGTACAGTGAAACCTGAATCTTGTTCTCCACCAGAATATACAGATCATGGGAAGACAACAAGCTTCACACAAATCATGGTTGCCTCTTCCATTGGGTTGATATTTGCTGTGGCAATGCATTATCGTCTCAAAAATATGAGAGATCAAAAGATTATCCCACGTCTCAGATTATCAAAACATGGCCACCCCCCTAAGCTTGAAAGGTTCTCTCATTACGTAGCTGGGCAAATGGGGTTCAAAGATAGGAGAAGTTGTCCACATTTATGTAAACTGGCTTCTGAATACATAACGAAATGTGAGGGATGTGAAGATGATATATACGCCTTCTTTGAGAACGAACCTGATGCGGATTCACTTTTTGTAAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTCAGTTACTTTGCATTCCATTGGAAACATGGTGATGTTTTGATTAGTCAGGTGATGAGTTCTGAAGCTGAGCCAAAAAAGAAGCTCAAGAACATAGTTATGGCTGCAACTAGGGAACAAAGAGTGGAGAGGGTAACCAAGAATCTGAAGGTGGCTAGAGTTTTTAATACATTGGTAGAAGAGATGAAAGCAATGGGACTTGTATCAGCTGATGACTCTCAATGCACAGAGGTCATGGCTCCAGTAGCTCACAGTGATAGGAGTCCAGTGCTCCTTTTCATGGGAGGTGGTATGGGAGCTGGTAAGAGCACAGTGCTTAAGGAGATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCAGGGAATGCTGTTGTTATTGAGGCTGATGCTTTTAAAGAATCAGATGTCATCTACAAGGCCCTTAGCTCAAGAGGGCATCACGACATGATTAAAACAGCTGAACTGGTGAAACTCTTCTCTGCTTTTTCCCTGCAATTTATCATGTTCAAAGTTTTAAACATTGTGGTACACCAATCTTCCACAGATGCAGCCTCTTCCCTTCTGGTAACAGCACTAAACGAGGGGAGGGATGTAATTATGGATGGAACACTCTCCTGGGTACCATTTGTTGTGCAGACAATAACAATGGCGAGAAATGTCCACCGCCGCCGTTACCGCATGGGAGCTGGATACAGAATAAATGCTGATGGAACTGTAACAGAAAACTACTGGCAGCGAATTGAAGATGAAGAACCTGAACAAGTTGGAGGGAAAAAGAGAAAGCCATATAGGATAGAACTGGTTGGAGTAGTGTGTGATGCTTACCTTGCAGTCATTAGAGGCATAAGGAGAGCTATAATGTGTAGAAGAGGAGTAAGGGTAAAGCCACAATTGAAATCCCACAAGAGATTTGCTGATGCTTTTATGACTTACTGTCAACTAGTAGACAATGCCCGGCTATACAGTACAAATGCTTTGGAAGGGCCACCTAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGTTAGTTGATCCAGATGAAATAGACTGTTTGAAGAAGGTTGCTAGGTTGAATGAAGATGCCAACTCCATATATGAACTGTACAAGCACCCAAACCCAGTCCGTCAAGCTGGATCCATATGGAAAGACATTGTATTATCACCTTCAAGGTTGAACATCCAACAAGAGCTCAAGTATTCAATCCAAAAGGTTGAGAGATACAAAAGTGGTTTATGA 1638 0.4225 MMQSTVKPESCSPPEYTDHGKTTSFTQIMVASSIGLIFAVAMHYRLKNMRDQKIIPRLRLSKHGHPPKLERFSHYVAGQMGFKDRRSCPHLCKLASEYITKCEGCEDDIYAFFENEPDADSLFVKLVEEFERCILSYFAFHWKHGDVLISQVMSSEAEPKKKLKNIVMAATREQRVERVTKNLKVARVFNTLVEEMKAMGLVSADDSQCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKEILKEPFWAGAAGNAVVIEADAFKESDVIYKALSSRGHHDMIKTAELVKLFSAFSLQFIMFKVLNIVVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGAGYRINADGTVTENYWQRIEDEEPEQVGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRGVRVKPQLKSHKRFADAFMTYCQLVDNARLYSTNALEGPPKLIGWKDRDKTLLVDPDEIDCLKKVARLNEDANSIYELYKHPNPVRQAGSIWKDIVLSPSRLNIQQELKYSIQKVERYKSGL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0175 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 374 IPR027417 -
Lal12g0175 545 Pfam Zeta toxin 217 287 IPR010488 GO:0005524|GO:0016301
Lal12g0175 545 Gene3D - 206 463 IPR027417 -
Lal12g0175 545 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 20 295 - -
Lal12g0175 545 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 308 542 - -
Lal12g0175 545 PANTHER UNCHARACTERIZED 308 542 IPR044802 -
Lal12g0175 545 PANTHER UNCHARACTERIZED 20 295 IPR044802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0175 Lal-Chr12 1225845 1229180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0175 - - adu:107473533 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0175 12 1225845 1229180 Lal12g0175 12 1225845 1229180 ECH
Lal12g0175 12 1225845 1229180 Lal24g0137 24 992664 998491 LSH
Lal20g0017 20 149633 153626 Lal12g0175 12 1225845 1229180 PCT
Lal12g0175 12 1225845 1229180 Lal20g0017 20 149633 153626 PCT