Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0174 ATGGCAACAGAAGACCCTACTCTCGCCGTTGAAGTTCCCGCACCGGAGCCAATCACCACCGAACCACCACCACCGCCACCGGCCGAGGAATCCAAGCCTGCTACCAAAGCTAAGAAAACCAAAGATCCCAAACCTAAGAAAGTTACCAAACCACGCATTTCTACCCATCCTCCTTACGAAGAGATGATTAAGGAAGCAATTGTGACGTTGAAAGAGAGAACAGGTTCAAGCCAGTATGCGATTACGAAGTTTGTTGAAGAGAAACATAATCTCCTTCCTCCAAACTTCAGGAAGCTCTTGCTCTTCAATTTGAAGAAGCTTGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGCTCCTTCAAGATTCCTTCAACTCCCAAAAACAAGCCCGAACCTGCTAAACCCAAGCCCAAATCTGTAGCTAAACCTGCACCCAAGGCACCGGCTAAAGCTAAGCTCTCTGCTAAGCCCAAGCCCAAGCCTGCGGTGGCAAAATCGAAAGCTGTTACTGCTAAGCCCAAGGCTGCTGTGGCAAAGACTAAGGTTGTTGCTGCTGCGAAGCCCAAGGCTGTGGCTCCGGCGAAGACTAAGGTTGTTGCTGCAAAGCCCAAGGCTGCTCCTAAGACTAAAGCAGTTGCTGTGAAGCCCAAGGCAAAGGCTACGAGGACATCGACGAGGACTTCTCCAGGGAAGAAGGTTACGGCAGTTAAGCCGGCGGTTAAGAAGTCTGCGGCGGTGAAGAAGGCTCCGGTGAAGAGTGTGAAACCGAAGAGTGTAAAGTCACCGGCAAAGAGGGTTGGGGCTAAGAGGAATGGAAGGAAGTGA 825 0.5042 MATEDPTLAVEVPAPEPITTEPPPPPPAEESKPATKAKKTKDPKPKKVTKPRISTHPPYEEMIKEAIVTLKERTGSSQYAITKFVEEKHNLLPPNFRKLLLFNLKKLVASGKLVKVKGSFKIPSTPKNKPEPAKPKPKSVAKPAPKAPAKAKLSAKPKPKPAVAKSKAVTAKPKAAVAKTKVVAAAKPKAVAPAKTKVVAAKPKAAPKTKAVAVKPKAKATRTSTRTSPGKKVTAVKPAVKKSAAVKKAPVKSVKPKSVKSPAKRVGAKRNGRK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0174 274 PANTHER HISTONE H1.1 2 274 - -
Lal12g0174 274 CDD H15 54 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal12g0174 274 PANTHER HISTONE H1 2 274 - -
Lal12g0174 274 MobiDBLite consensus disorder prediction 258 274 - -
Lal12g0174 274 SUPERFAMILY "Winged helix" DNA-binding domain 54 136 IPR036390 -
Lal12g0174 274 MobiDBLite consensus disorder prediction 1 60 - -
Lal12g0174 274 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal12g0174 274 MobiDBLite consensus disorder prediction 16 31 - -
Lal12g0174 274 MobiDBLite consensus disorder prediction 118 274 - -
Lal12g0174 274 Gene3D - 52 135 IPR036388 -
Lal12g0174 274 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal12g0174 274 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal12g0174 274 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal12g0174 274 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal12g0174 274 PRINTS Histone H5 signature 146 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal12g0174 274 PRINTS Histone H5 signature 206 225 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0174 Lal-Chr12 1225787 1231251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0174 25 126 Single Myb Histone (SMH) Gene Family AT1G49950 34.545 9.27e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0174 K11275 - cpap:110814810 124.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0174 12 1225787 1231251 Lal12g0174 12 1225787 1231251 ECH