Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0169 ATGGAAGGAAACTATGTGAACAGAAACGGTCATAGAGAGGATCATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCAGCCAGAAACTACGCTTGTAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCGTTGGGTGGACACATGAATGTTCACAGAAGGGATAGAGCAAGATTGAGATCTTCCATATCTTCATGGGTTTCTGAGTGCCCTAAACCTAACCCTAGTACCACTAAGCCTAATAACTCATCATCTCCGTTACCTGATGAGCTTTTGAATTGCACACATCGTTCTCCACATTGTAGTCCGTATCTCACTTTGTCTTCTACCAGTGGAGATAAGAAACCAAGATTGGCATCATCTTCACAGCAGCTTCCTCCTTTGAGTCTCCAAAGCATGGACATTAAGATGGCTAAGAACACAACAAGGAGTACTTTTGATGTTGAAGAATTGAAGGGTTGTAAAGAGGAGGATGAAGACAAGAATAGTAGTGAGCATAACATTACGTTGGATCTGGGAATAGGGTTACTCAAACAAGAGGAGAAGTTAGATTTGGAACTTCGATTGGGGCACTAA 585 0.4291 MEGNYVNRNGHREDHSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSISSWVSECPKPNPSTTKPNNSSSPLPDELLNCTHRSPHCSPYLTLSSTSGDKKPRLASSSQQLPPLSLQSMDIKMAKNTTRSTFDVEELKGCKEEDEDKNSSEHNITLDLGIGLLKQEEKLDLELRLGH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0169 194 MobiDBLite consensus disorder prediction 69 94 - -
Lal12g0169 194 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Lal12g0169 194 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Lal12g0169 194 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 7 194 - -
Lal12g0169 194 MobiDBLite consensus disorder prediction 69 95 - -
Lal12g0169 194 SMART c2h2final6 33 55 IPR013087 -
Lal12g0169 194 Gene3D Classic Zinc Finger 17 83 - -
Lal12g0169 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Lal12g0169 194 PANTHER OS07G0101800 PROTEIN 7 194 - -
Lal12g0169 194 MobiDBLite consensus disorder prediction 108 131 - -
Lal12g0169 194 Pfam C2H2-type zinc finger 33 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0169 Lal-Chr12 1204242 1204826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0169 4 193 C2H2 Transcription Factor Family AT3G23130 37.949 3.90e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0169 zf-C2H2_6 5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0169 - - gmx:102660985 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0169 12 1204242 1204826 Lal12g0169 12 1204242 1204826 ECH