Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0163 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTGTCTCTGGCACCAGAATTTCACCCCACCGACACTGAATTCGCCGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCACCTTTGGGATATGCAAGATTATCCCACCATTGCCAAACCTTCAAAAAAATATGTCCCTCTTGAAATGCCCTGACATGAGTCAAGATAATAGTTCCTTAGGCGTTTGTAATTCTTTGAAAACGGGCCCAGAAGATAGTTGTAGTCATAGGGTGCCGCGAGCTGTGTTTACTACTAGGCAGCAAGAACTAGGGCAGAGTGTGAAAAAGGCCAAAGGGGCAGGTCAGAACCCACTGTCATGTGTGCAAAAGCAAGTGTGGCAAAGTGGGGAAGTTTATACACTGGAACAGTTTGAGTCTAAATCAAAGACTTTCGCAAGAAGCGTGCTGGGGACGGTGAAGGATGTTTCTCCACTGCATATAGATGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATATTGAGTATGCCAATGATGTGCCTGGCTCTGCTTTTGGAGAATCCAAGGGTGAACTTTGTTACAGTCCTAGGAAGCGAAGAAGGACGCCTTATAACAGCAGAATAGATACCCCTGTTTGTAAACAAACTGAAATGAATAGCATCGTAAGAGATGCCAAAAGTAATGAGACTAAGGTTGCCTCTTCCCAGAGTTATGCAGATGCTTGTTTAAAGACGTCCGAAGCAGCTATGCCTGTGTCAACATTTCCATTGAATGAAGCTTTACAATCTTCTGGGGAAGCCAGCAGTGATATGCAAGGCACTTCTGGTTGGAAGCTTTCAAATAGTCCTTGGAACTTGCAGACTTGGTATTCTGTTCCCGGTGATTATGCATTTGCTTTTGAGGAAGTCATCTGCTGTCAGGCTTATGGCGATAACATTGATCACTTAGTTATGGTAGAGGCTGTTGCTGGTGTTTCTGCCGAATCTCCAATTATCCTTGTTGAACGTGAACTTATATCTGTGCCTAACCCTGATGAATTTGTTGTTACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTACTGTAGCTAAGGAAGCCGCAGTGCGTAGAGCTGTGATGAATTATCTTCCCATGCTCTCCCATCAGCAATTGCTTTACTTGCTGACCATGTCTTTTATTCCAAGAGTGCCAAGAACACTATTACCTGGTGTGTGTAGTTCACGTCTAAAAGATCGTCAAAAAGAAGAAAGAGAGTTTTTAGTAAAAAAAGCTTTTATAGAAGATATGTTGCAGGAAAACAAGCTGATATCCGTCCTTCTTGGAAAGCAATCAACCAAACAAGCTGTTTTATGGAATGCTGATTTACTACCAAATCTCAGTAAAGATTGTCGGTTCTCTGATATAGCTTCTACTAATGGAACCTTTGCAGCTAACATGCAAAATATTAGTTCTTCAGATAAAAGCAGCCATTATCTGTTTGACGAGATGAGTTTGTCTATGGAGAATCTGAGTGAATTAACTCTTGGGGATGATGATCTTTCATGTGACTTCCAAACTGATTCAGGACCCTTGGCTTGTGTGGGTTGTGGAGTCCTTGGTTTTCCATTTATGACTGTGGTGCAACCATATGAGAAATTGATAATGGAACTTTTTCCTGTTAATCATCATCTAGTTCAAGATTCCTTTCTGAACTCTACTGTCTCCCTTCATAGCTCCGCCTCAAATCTTTGTGTTTCTGAACTTTCTTCAGCAAAGGAATCATCTAATCAATCATTGAAGACATTCAATAAATGTTGGAATGCCTCCAGTAAATTTTTGAGGCCACGGATTTTTTGCCTGGAGCATGCTGTTCAGATAGTGGACATGCTGCAGTCCAAAGGTGGAGCCAATGTGCTAATAATTTGCCATTCCGATTACCAGAAAATGAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACATGGTGCTTTTGATTATAATGAGGTTCCATTAGATATTGCATCCCCAGAAAATTTGACTCTGATTGATTTGGCAATTGGTGAACAACAAGATGAATGTGAAGACTGGACATCCAAACTTGGCATTAACCTTCGGTTTTGTGTCAATGCAAGAAATAACTCCGCATCTAAACAAGTTCCCTGGACACTATCGTTAGGGATGCTGTTCTCCGATAAACATCCTGGTTTAGACTGTTTATCATTAAATTGGCAGTCACGGAGATCTCGGTCCAAAAGGTTAAATCATTCAGCTCAGACTAAAACCTGTGACATAATTCAGAGAAAGAAGGATGGTCAATTGGAGGGAAGAAAAGATGTCATTGATAGTAATGGTAATAGGTCATGTTTAGATGATGAAATGCATAAAGAATTATAA 2430 0.4123 MGNVEIPNWLEGLSLAPEFHPTDTEFADPIAYISKIEKEASTFGICKIIPPLPNLQKNMSLLKCPDMSQDNSSLGVCNSLKTGPEDSCSHRVPRAVFTTRQQELGQSVKKAKGAGQNPLSCVQKQVWQSGEVYTLEQFESKSKTFARSVLGTVKDVSPLHIDAMFWKAASEKPIYIEYANDVPGSAFGESKGELCYSPRKRRRTPYNSRIDTPVCKQTEMNSIVRDAKSNETKVASSQSYADACLKTSEAAMPVSTFPLNEALQSSGEASSDMQGTSGWKLSNSPWNLQTWYSVPGDYAFAFEEVICCQAYGDNIDHLVMVEAVAGVSAESPIILVERELISVPNPDEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAVMNYLPMLSHQQLLYLLTMSFIPRVPRTLLPGVCSSRLKDRQKEEREFLVKKAFIEDMLQENKLISVLLGKQSTKQAVLWNADLLPNLSKDCRFSDIASTNGTFAANMQNISSSDKSSHYLFDEMSLSMENLSELTLGDDDLSCDFQTDSGPLACVGCGVLGFPFMTVVQPYEKLIMELFPVNHHLVQDSFLNSTVSLHSSASNLCVSELSSAKESSNQSLKTFNKCWNASSKFLRPRIFCLEHAVQIVDMLQSKGGANVLIICHSDYQKMKAHARAVAEEIHGAFDYNEVPLDIASPENLTLIDLAIGEQQDECEDWTSKLGINLRFCVNARNNSASKQVPWTLSLGMLFSDKHPGLDCLSLNWQSRRSRSKRLNHSAQTKTCDIIQRKKDGQLEGRKDVIDSNGNRSCLDDEMHKEL 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0163 809 Gene3D Cupin 10 394 - -
Lal12g0163 809 SMART JmjN_1 15 56 IPR003349 -
Lal12g0163 809 Pfam JmjC domain, hydroxylase 289 373 IPR003347 -
Lal12g0163 809 Pfam jmjN domain 17 50 IPR003349 -
Lal12g0163 809 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lal12g0163 809 PANTHER LYSINE-SPECIFIC DEMETHYLASE 289 791 - -
Lal12g0163 809 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 289 - -
Lal12g0163 809 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 289 791 - -
Lal12g0163 809 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 289 - -
Lal12g0163 809 ProSiteProfiles JmjC domain profile. 124 390 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0163 Lal-Chr12 1164474 1171498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0163 1 798 C2H2 Transcription Factor Family AT5G04240 46.742 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal12g0163 JmjC 6.4e-10 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0163 12 1164474 1171498 Lal12g0163 12 1164474 1171498 ECH
Lal12g0163 12 1164474 1171498 Lal13g0140 13 910136 917844 LSH