Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0162 ATGGGATTCATCAGCACTTTCTTCGGGATCATTGGTTTTGTTATTGGAATCTCTCTTGGCCTCATCATTGGCTTCTTTCTATTTGTTTATTCTCAACATACCAAACAAGGCAAGGACCCTGTGGTTAGACCAGTTGGTGAATTAGGTCCAAAAGCTTTGCAAGAACTTCTACTTGAGATTCCTCTGTGGGTGAAGACACCTGATTATGAACGAGTTGATTGGTTGAACAATTTTTTGCTGGATATGTGGCCTTTTTTGGACAAGGCAATTTGTGGGATGATTAGAATCACAGCAAATCCAATATTTGCTGAATACATTGACAAGTATCAGATTAAAGGAATTGAGTTTGATAAGTTAAGCCTTGGTACTCTTCCTCCTACTATCTGTGGTATTAAAGTCTTAGAAACAAATGAAAAGGAATTGGTCATGGAAAAAGTGATCAAATGGGCTGGAAATCCAAACATAGTGTTGGATTTGCATGTGTCGTCTTTGAAGATCCCAATTCAGTTAGTAGACTTACAAGTATTTGCGACTCTGCGGACAACTTTAACACCTTTAGTGCCTGCATTCCCCTGTTTTGCAAAGATTGTGGTATCTTTGATGGAGAAGCCTCACGTGGATTTCGGGATGAAAATATCTGGAGGAGACATCATGGCTATACCTGGTCTTTATAGATTTGTTCAGGAAACAATACAAAAGCAAGTTGTGGGCCAATATCTCTGGCCTCAAATCCTGGAAATTCCTATTATGGATGACTCAACGGTAGCTGCAAACAAGCCTGTGGGAATATTACATGTGAATGTAGTTCGGGCACATAAGCTTTTGAAGATGGACTTGTTGGGAACTTCTGATCCTTATGTCAAACTAACCCTGACTGGAGACAATCTTGCAGCAAAGAAAACCACTATCAAGAGGAGGACTTTGAATCCGGAGTGGAATGAGAAGTTCAATCTTGTTGTGAAGGACCCTCAATCTCAAGCTCTCCAATTACAAGTCTATGACTGGGACAAGGTTGGTGTTCATGACAGGCTAGGAATGCAATTAATCCCTCTTAAGGTTTTTAAACCCTATGAGAATAAAGAATGTACACTTGATTTACTTAAGGACACAAATATGAATGAAACTCTAAATAAGAAGAATAGAGGACAGATTGTGGTGGACATGACTTTTGTTCCTTTCAAAGAAGATAGTATGAAGTTTGATGAACCCTCTGAAAGATATAACAAAAATGAAAGTGGGAGTGATGTTGTATCTGATGATGAGATCCAAGAAGGAGCAGGTTTACTTTCACTTGTGATACTTGAGGCTGAGGAGGTTGAGGGGGATCATCACAACAACCCTTATGCAGTGCTTATCTTTAGAGGTGAGAAGAAAAGGACAAAGATGATGTGGAAAACTCGTCACCCATGTTGGAATGAAGAATTTCAATTCGTGTTAGAGGAGCCCCCTCTACATGAGAAAATACACATTCAAGTTTTGAGCAAGAGGAAGAACTTTAGTTTTCCGTCAAAGGAATCACTGGGGTACGTGGAGATAAACCTGAATGATGTAGTGAGCAATGGTTACATTAATGATAAATACGACCTAATAAATTCAAAGAATGGAACCATACATGTTGAGATACAATGGACACCAGCTTGA 1641 0.3931 MGFISTFFGIIGFVIGISLGLIIGFFLFVYSQHTKQGKDPVVRPVGELGPKALQELLLEIPLWVKTPDYERVDWLNNFLLDMWPFLDKAICGMIRITANPIFAEYIDKYQIKGIEFDKLSLGTLPPTICGIKVLETNEKELVMEKVIKWAGNPNIVLDLHVSSLKIPIQLVDLQVFATLRTTLTPLVPAFPCFAKIVVSLMEKPHVDFGMKISGGDIMAIPGLYRFVQETIQKQVVGQYLWPQILEIPIMDDSTVAANKPVGILHVNVVRAHKLLKMDLLGTSDPYVKLTLTGDNLAAKKTTIKRRTLNPEWNEKFNLVVKDPQSQALQLQVYDWDKVGVHDRLGMQLIPLKVFKPYENKECTLDLLKDTNMNETLNKKNRGQIVVDMTFVPFKEDSMKFDEPSERYNKNESGSDVVSDDEIQEGAGLLSLVILEAEEVEGDHHNNPYAVLIFRGEKKRTKMMWKTRHPCWNEEFQFVLEEPPLHEKIHIQVLSKRKNFSFPSKESLGYVEINLNDVVSNGYINDKYDLINSKNGTIHVEIQWTPA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0162 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 392 IPR035892 -
Lal12g0162 546 Pfam C2 domain 262 359 IPR000008 -
Lal12g0162 546 Pfam C2 domain 428 528 IPR000008 -
Lal12g0162 546 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 245 IPR039010 -
Lal12g0162 546 CDD C2 429 529 - -
Lal12g0162 546 ProSiteProfiles C2 domain profile. 241 364 IPR000008 -
Lal12g0162 546 PRINTS C2 domain signature 279 291 IPR000008 -
Lal12g0162 546 PRINTS C2 domain signature 306 319 IPR000008 -
Lal12g0162 546 PRINTS C2 domain signature 328 336 IPR000008 -
Lal12g0162 546 ProSiteProfiles C2 domain profile. 408 527 IPR000008 -
Lal12g0162 546 PANTHER SYNAPTOTAGMIN-3 1 544 - -
Lal12g0162 546 SMART C2_3c 263 363 IPR000008 -
Lal12g0162 546 SMART C2_3c 428 526 IPR000008 -
Lal12g0162 546 Gene3D C2 domain 428 546 IPR035892 -
Lal12g0162 546 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 544 IPR045050 GO:0008289
Lal12g0162 546 CDD C2 264 366 - -
Lal12g0162 546 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 68 250 IPR031468 GO:0008289
Lal12g0162 546 Gene3D C2 domain 256 426 IPR035892 -
Lal12g0162 546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 545 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0162 Lal-Chr12 1158925 1165621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0162 259 482 Lipid Metabolism Gene Families AT3G61300 24.786 1.01e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0162 - - gmx:100813029 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0162 12 1158925 1165621 Lal12g0162 12 1158925 1165621 ECH
Lal12g0162 12 1158925 1165621 Lal24g0129 24 929959 934445 LSH