Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0159 ATGGAGAAGATGGTGGGACCAAGCTTCATAGACGAGATAGATTGTGATAACTTCTTCGACCACATCGACGACCTTCTTGAATTCCCCGTCGAAGACGTCGTTGATGGCTCCGCTGACACCATTCCTGGCGTCTCAGCCGCCGGAAATTGCAACTCTCTTGCAAGTATCTGGCCACCCGAGACTAACTCATTCCCCGACGTTGACTCCATATTTTCTGGCAAAACCACCTCCGACCTCTCAGCGGAGCTCTCTGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTGTCCAACTTTGTGGAGGACTCTTTCTCAGGGGTAAGCCTAACAATGAGCAAAGTGGAGCAACCATCTTGCACCACCATCACAACCACCACAAAGGAGGACTCATCATCATTTCACAACCAATTCCAGACACCAAGCCCGGTCTCTGTCCTTGAAAGCAGCAGCTCCTACTCCGGTGGTAAGACCATCCCTCGAAGCAGCCCGGAGATTTACATCCCCGTGCCTTGTGGACGTGCACGAAGCAAGCGTCCACGTCCCGCAGCATTCAACCCTCACCCTGCAATGCATCTTATCTCCCCTGCTTCCTCTTGTGTTGGGGAGAATATGCAGCCTAATGTAGTCTCAATCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACCTGTCACAAAGATGCCTAAGCATTGTTCTGGGGAGCATAAGAAGAGAAAGAAGATTAAATTGTCACTTCCATCACCTCCACCTGCTGATGATACCAACCAGAATGGTTCACAAGCTGTTAGGAAATGTATGCATTGTGAGATAACTAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCGTGTGGCGTACGCTACAAGTCCGGTCGGCTTTTCCCTGAATACCGACCTGCTGCTAGTCCAACATTTTGTCCATCTGTGCACTCCAATTCTCATAAGAAAGTACTTGAAATGAGATACAGGACCATTGAGGAAACTGGCTTTGGATCTCATTCAGTTGCAGCTGCTTCTCCAGAACTCATTCCAAACACTAACAGCAGCGTCCTTACCTTGGAGTACATGTAA 1095 0.4895 MEKMVGPSFIDEIDCDNFFDHIDDLLEFPVEDVVDGSADTIPGVSAAGNCNSLASIWPPETNSFPDVDSIFSGKTTSDLSAELSVPYEDIVQLEWLSNFVEDSFSGVSLTMSKVEQPSCTTITTTTKEDSSSFHNQFQTPSPVSVLESSSSYSGGKTIPRSSPEIYIPVPCGRARSKRPRPAAFNPHPAMHLISPASSCVGENMQPNVVSIKASSDSENFAESQPVTKMPKHCSGEHKKRKKIKLSLPSPPPADDTNQNGSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRYRTIEETGFGSHSVAAASPELIPNTNSSVLTLEYM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0159 364 PIRSF Txn_fac_GATA_plant 1 351 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal12g0159 364 MobiDBLite consensus disorder prediction 125 159 - -
Lal12g0159 364 CDD ZnF_GATA 266 323 IPR000679 GO:0006355|GO:0043565
Lal12g0159 364 PANTHER GATA TRANSCRIPTION FACTOR 4 363 - -
Lal12g0159 364 PANTHER GATA TRANSCRIPTION FACTOR 8 4 363 - -
Lal12g0159 364 SMART GATA_3 261 311 IPR000679 GO:0006355|GO:0043565
Lal12g0159 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 265 324 - -
Lal12g0159 364 MobiDBLite consensus disorder prediction 218 260 - -
Lal12g0159 364 ProSiteProfiles GATA-type zinc finger domain profile. 261 297 IPR000679 GO:0006355|GO:0043565
Lal12g0159 364 MobiDBLite consensus disorder prediction 125 158 - -
Lal12g0159 364 ProSitePatterns GATA-type zinc finger domain. 267 292 IPR000679 GO:0006355|GO:0043565
Lal12g0159 364 Pfam GATA zinc finger 267 300 IPR000679 GO:0006355|GO:0043565
Lal12g0159 364 Gene3D - 260 311 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0159 Lal-Chr12 1132076 1135436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0159 1 329 C2C2-Gata Transcription Factor Family AT4G32890 36.012 1.38e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal12g0159 GATA 6.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0159 - - lang:109340763 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0159 12 1132076 1135436 Lal13g0136 13 875011 878704 ECH
Lal12g0159 12 1132076 1135436 Lal12g0159 12 1132076 1135436 ECH
Lal12g0159 12 1132076 1135436 Lal13g0136 13 875011 878704 LSH
Lal12g0159 12 1132076 1135436 Lal24g0127 24 907623 910897 LSH
Lal9g0919 9 6946862 6950989 Lal12g0159 12 1132076 1135436 PCT
Lal12g0159 12 1132076 1135436 Lal9g0919 9 6946862 6950989 PCT