Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0158 ATGTTTATGGTTAATTCCATGGAGAGGAGTTCAGAAAGATGCTTAGATTCTCAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCCCTCAACACAAAAGTCTTCTACTTTCCTCAGGGTCATGCAGAACATGCACATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTTATTCCTTGCAGGGTCTCAGCTATGAAATTCATGGCAGACCCTGACGCGGATGAGGTATTTGTAAAAATGAGGTTGAACCCTTTGGGGGAGAATGAATTGAATTATGAAGATGATTGTTTCTTAGGAAACAGTGGAGTGGAAAGTCAAGAAAAACCAGCTTCTTTTGCCAAGACTTTGACACAATCTGATGCCAACAATGGTGGAGGTTTCTCTGTGCCTCGTTACTGTGCTGAGACAATCTTTCCAAGGTTGGATTATTCAGCAGAACCACCAGTTCAGACCATTATTGCCAAGGATGTGCATGGACAGTGCTGGAAGTTCAGACATATTTATAGAGGCACACCAAGGAGGCATCTTTTGACAACTGGATGGAGCAATTTTGTGAACCATAAGAAGCTTATTGCTGGTGATTCCATTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTGTTGGTATAAGGAGGGCTAAGAAGGGAGGAATTGGTGGAGGGACCGAGTTCTCTTCTTGTTGGAACAACAACCATGCAGCCCCTCCTCTATTTGGTGTTGGTTCTGGTTTCTTTTGTGGGAATGAGAAAAACAACTCTTTGGTGAGGAGAAAAGGCAGTGATGAATTTGTGGGAAAAGTGGCTGCTGAATCTGTTGTTGAAGCTGTAACTTGTGCTGTTAATGGAAAACCCTTTGAGGTTGTGTACTATCCCAGGGCTAGTACCCCAGAGTTTTGTGTTAAGGCTTCTTCTGTGAAGGCTGCAATGCAAATACAGTGGTGTTCTGGAATGAGATTTAAAATGCCCTTTGAAACTGAGGACTCTTCTAGGATTAGCTGGTTCATGGGAACCATCTCTTCTGTTCAAGTAGCAGATCCCGTTCATTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGACCTTCTTCAAAATGTTATGAGTGTAAACCCTTGGTTGGTTGAACTAGTCACAAACATGCCCACCTTCCATCTCTCTCCATTCTCACCACCAAGAAAGAAACAAAGGTTTGTGCAGGACTCAGAAATTTACCTCAACAACCAACTTCCAATGCCATCATTCTCCAGCAATCTTCTCAATCACCATACTAACTCTCTATGTAACATTCAAGACCATAGTTCTTCAAGCATACAGGGACCCAGGCATGCTCAATTTGGACTAACTCCATCTGTTTTCCCCTTCAACACCAAGCAGGTGCAGCCAGAAATGCATCTTTTTGGCTTCCAAAGGCTTGACCATGCAGCACAACCTGTTAGGCCACCTTGTGGAATCTATAATAGTGGCACTAAGAAAAGTAATGTTGATATGTCTTGCTTGTTGACTATAGGAAATCCTGGCCAGAGTTTCAAGGAATCTAATGAAGCAAAAGCACCACATATCTTGTTATTTGGAAAACTCATTCATACTGAGCAGAAGAGCTCAAACAATAGCTCTACTGGTACAGGTGGGAATAGTGCATCTGATAGTACTTCACAGAAGACATCAAATGCTTCTGATGGCCAGGGTTCTTCTGCTTTACATCAAAACAGTCCAATTGAGAACTCTTCTGAAGGAGGGTCTCCCTGGTACAAAGATCAGCACAATACTGATCTTGCAACCGAAAAAGTTAACATATTATGTATGGCTTTATAA 1839 0.4296 MFMVNSMERSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKFMADPDADEVFVKMRLNPLGENELNYEDDCFLGNSGVESQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTEFSSCWNNNHAAPPLFGVGSGFFCGNEKNNSLVRRKGSDEFVGKVAAESVVEAVTCAVNGKPFEVVYYPRASTPEFCVKASSVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPVHWPDSPWRLLQVVWDEPDLLQNVMSVNPWLVELVTNMPTFHLSPFSPPRKKQRFVQDSEIYLNNQLPMPSFSSNLLNHHTNSLCNIQDHSSSSIQGPRHAQFGLTPSVFPFNTKQVQPEMHLFGFQRLDHAAQPVRPPCGIYNSGTKKSNVDMSCLLTIGNPGQSFKESNEAKAPHILLFGKLIHTEQKSSNNSSTGTGGNSASDSTSQKTSNASDGQGSSALHQNSPIENSSEGGSPWYKDQHNTDLATEKVNILCMAL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0158 612 Gene3D - 115 219 IPR015300 -
Lal12g0158 612 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Lal12g0158 612 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Lal12g0158 612 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal12g0158 612 PANTHER AUXIN RESPONSE FACTOR 16 8 581 - -
Lal12g0158 612 MobiDBLite consensus disorder prediction 541 595 - -
Lal12g0158 612 CDD B3_DNA 116 217 IPR003340 GO:0003677
Lal12g0158 612 Gene3D - 317 391 - -
Lal12g0158 612 SUPERFAMILY DNA-binding pseudobarrel domain 107 217 IPR015300 -
Lal12g0158 612 SMART B3_2 117 219 IPR003340 GO:0003677
Lal12g0158 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0158 Lal-Chr12 1119401 1122383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0158 3 597 B3 DNA Binding Superfamily AT4G30080 54.441 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal12g0158 B3 4.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0158 - - gmx:100803053 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1500 13 14608534 14611815 Lal12g0158 12 1119401 1122383 ECH
Lal24g0889 24 7272787 7276678 Lal12g0158 12 1119401 1122383 ECH
Lal12g0158 12 1119401 1122383 Lal12g0158 12 1119401 1122383 ECH
Lal12g0158 12 1119401 1122383 Lal24g0126 24 899001 902404 LSH