Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0139 ATGGGAAAAGAGAAGTTTCACATCAACATTGTGGTCATTGGCCATGTCGATTCTGGGAAGTCAACTACCACTGGCCATCTGATCTACAAGTTGGGAGGTATTGACAAGCATGTCATTGAGAGATTCGAGAAGGAAGCTGCCGAGATGAACAAGAGGTCCTTCAAGTATGCATGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCTCTCTGGAAGTTTGAGACTACCAAGTATTACTGCACGGTCATTGATGCTCCTGGCCACAGGGATTTCATTAAGAACATGATTACTGGTACATCCCAAGCTGACTGTGCTGTTCTTATCATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGTTGTAACAAGATGGATGCTACTACACCTAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTACCCATCTCTGGTCTACAAACCCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGGCCATCAGACAAGCCCCTCCGGTTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCCGTGGGACGTGTTGAGACTGGTGTTGTGAAGCCTGGAATGGTGGTTACTTTTGGCCCAACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCATCATGAAGCTCTCCAAGAGGCCCTTCCTGGTGACAATGTTGGATTCAATGTTAAGAATGTTGCGGTGAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACTCTAAGGATGACCCTGCCAAGGAGGCTGCTAATGAAGACAATGCGCAACCGCATTCTTCTGGAAATGGTTATGCCCCTGTTCTTGATTGCCACACCTCCCACATAGCTGTCAAGTTTGCTGAACTTGTGACCAAGATTGACAGACGATCTGGTAAGGAGATTGAGAAGGAACCCAAATTTTTGAAGAATGGTGATGCTGGACTTGTCAAGATGATTCCAACCAAGCCCATGGTGGTTGAAACTTTTGCAGAGTACCCTCCACTTGGTCGTTTTGCTGTCAGAGACATGCGCCAAACTGTGGCTGTGGGAGTCATCAAGAGTGTGGAGAAGAAGGATCCTACTGGAGCCAAAGTCACCAAGGCTGCAGCAAAGAAGAAGTGA 1302 0.4631 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKHVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGLQTLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANEDNAQPHSSGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGLVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAAKKK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0139 433 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 329 415 IPR009001 -
Lal12g0139 433 CDD EF1_alpha_II 221 311 - -
Lal12g0139 433 MobiDBLite consensus disorder prediction 306 332 - -
Lal12g0139 433 Gene3D - 1 219 IPR027417 -
Lal12g0139 433 SUPERFAMILY Translation proteins 222 346 IPR009000 -
Lal12g0139 433 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lal12g0139 433 PANTHER TRANSLATION FACTOR 1 432 - -
Lal12g0139 433 Pfam Elongation factor Tu GTP binding domain 7 213 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 CDD EF1_alpha 9 218 - -
Lal12g0139 433 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 419 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lal12g0139 433 Gene3D Translation factors 220 307 - -
Lal12g0139 433 CDD EF1_alpha_III 328 412 - -
Lal12g0139 433 Pfam Elongation factor Tu domain 2 239 304 IPR004161 GO:0005525
Lal12g0139 433 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 432 - -
Lal12g0139 433 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 221 IPR000795 GO:0003924|GO:0005525
Lal12g0139 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Lal12g0139 433 Gene3D Translation factors 321 416 - -
Lal12g0139 433 Pfam Elongation factor Tu C-terminal domain 326 415 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0139 Lal-Chr12 974499 976703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0139 1 426 Eukaryotic Initiation Factors Gene Family AT5G60390 90.682 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0139 K03231 - gmx:100801611 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0139 12 974499 976703 Lal13g0118 13 738503 741039 ECH
Lal12g0139 12 974499 976703 Lal12g0139 12 974499 976703 ECH
Lal12g0139 12 974499 976703 Lal13g0118 13 738503 741039 LSH
Lal12g0139 12 974499 976703 Lal9g0937 9 7141559 7144094 PCT