Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0131 ATGGATCCAAAAGGGAGCCTGTATGATAACAATTGGGCAAGGACCTCTTCCTTGACCTCTCCTGGGAATGGATTACAGACAAATTTGTCCTCACATCCTCCCTCTTTCTATGGTGCAAAGATTGAAGCACCTTTCAAACAATTCAACCAAATCTCTCCAACCCAAGGTTTACTTCCAGGTGAATCTAACAATGATATTAAGATCCTTGATCAAGAAAATTTTGCACTTAGTGACTCCTCACAAATCACTAAACTTCAAGATTGGGATCCTAGTGTCATGTTGAATAACCTTTCCTTCATGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTAATAAAAGGTGCCAACCTTTTGGACGTCCTGATGAACTTGTGACTCAGGAACAGCAACTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTAAGGCACACCCTTACAAACACAAGTCCATCGGTTGGACTGCTCAGCCAGCTTCGTGGAAATACTTTTCCTTTTGGGTCAGGCCCTAGTAGTAGTGGTATTCGGCCACAAACTACTAGTGGAGATAAATTTTTTGATCAGTTCACTCAGAATGGTGTACCTAAAAATTGTGAAGTGGAGCAAAACTGCCATATTGAAGAACATGAAACAAGGGATGAAGATGATGCGGAAGAGGGAGAAAATCTTCCACCTGGTTCCTATGAGATTCTACAATTAGAAAAGGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATATGCGGGAAGGGATTCAAAAGGGACGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCTCTTGCAAAACCACATAAAGAATCTGGTTCAGAACCAAGGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGCAACAAGGATCACAAGAAATTCCAGCCTCTGAAGACTATTTTATGTGTCAAAAATCACTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCAACACCAAGAGGTTTTCGGTCTTGGCTGACCTTAAAACTCATGAGAAACACTGTGGTAAGGATAAGTGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGCCACATGGCTCTTTTCCAAGGTCACACACCAGCGATTCCTTTCGACGACACTAAAGGAGGACCAGCTGGGGCACTTGATCTCGAGATCAAAGAAAACAACAGTAAGGTGGGAAGTATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTCAAAACATGGACGTAAAAGGTAATATTGACGATCCTACCAATTATTTCTCGCCATTAAACTTGGAAGGTTGTAATTTTGGTGGGTTTAATGAATTCGCTCAACCTACATTTGAAGACTCGGAAGGTTCATTCTCATTTCTTATGTCCGGATCATTCAATTATGCTCCTAAAATTGCAGGCGAAACAAATTCTGACAATCTGTAG 1536 0.416 MDPKGSLYDNNWARTSSLTSPGNGLQTNLSSHPPSFYGAKIEAPFKQFNQISPTQGLLPGESNNDIKILDQENFALSDSSQITKLQDWDPSVMLNNLSFMEEKIHQLQDLVHLIVNKRCQPFGRPDELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTNTSPSVGLLSQLRGNTFPFGSGPSSSGIRPQTTSGDKFFDQFTQNGVPKNCEVEQNCHIEEHETRDEDDAEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSEPRLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKRFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHMALFQGHTPAIPFDDTKGGPAGALDLEIKENNSKVGSMNFCFGSNPSSENGVQNMDVKGNIDDPTNYFSPLNLEGCNFGGFNEFAQPTFEDSEGSFSFLMSGSFNYAPKIAGETNSDNL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0131 511 SMART c2h2final6 347 369 IPR013087 -
Lal12g0131 511 SMART c2h2final6 309 342 IPR013087 -
Lal12g0131 511 SMART c2h2final6 260 282 IPR013087 -
Lal12g0131 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 495 - -
Lal12g0131 511 MobiDBLite consensus disorder prediction 1 31 - -
Lal12g0131 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 495 IPR044300 GO:0010044|GO:0010447
Lal12g0131 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Lal12g0131 511 Gene3D Classic Zinc Finger 329 403 - -
Lal12g0131 511 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Lal12g0131 511 MobiDBLite consensus disorder prediction 9 31 - -
Lal12g0131 511 Gene3D Classic Zinc Finger 244 313 - -
Lal12g0131 511 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0131 Lal-Chr12 908834 910369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0131 228 509 C2H2 Transcription Factor Family AT1G34370 68.750 2.42e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0131 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0131 - - gmx:100170687 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0131 12 908834 910369 Lal12g0131 12 908834 910369 ECH