Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0122 ATGGGTACCTCCAATTTTCTCTTATTTTTCTTCTATTTGGTGGGTTTGTGTGCTATGACGGCTGCCAATGTTGTTTTGATTGGGAATGATGTTTCTCTCTCCTTCGATGATATCGAAGCTAATTTCGCTCCCGCGGTCGAAGGGTCTGGAGAATGTGGTACCTTATATTTGGCAGAGCCGCTTGATGCATGTACAGAACTGACAAATAAAGCCGAAAATCTTTCATATGTGAATTCACCTTTTGTTTTGGTGGTTCGAGGGGGATGCAGCTTTGAGGAGAAGGTCAGAAGTGCACAAAGGGCTGGATTCAAAGCTGCAATTATTTATGACAATGAGGATGGTGGTGTCTTGGTTGCAATGGCCGGAAATTCTGATGGTATAAGAGTACAGGCTGTATTTGTATCAAAAACTTCAGGTGAAATACTAAAGAAATATGCCGGATCAACTAATGTGGAACTATGGCTCATTGCAAGTTTTGAAAACTCGGCTTGGTCTATCATGGCAATTTCATTTATCTCCCTACTAGCTATGTCGGCAGTGCTGGCCACTTGTTTCTTTGTCAAGAGGCATCGTATAAGAAGAGAAAGGCCTCAAGCTTCTTGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGGTATTTACTGCTGTTTTAGAAGATAGCTACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGAGTTCTGCCCTGCTGTCACAAGTTCCATACTGTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGACGCAAGAACTGGTTTAACTGATCCACCACCTTCAGAATGCACACCTTTGCTTTCATCAAGCCTTGCATCTGTGGCATCCTCTGTCTTATCTTCCGGGAGATCATCGTTAGCATCTTCCTCAGCTATACAAATTGCTCGGACACCATCTCACTCCTCATATATTTCTCATAACCACTCTTTAGGTAGTACACCCTATGTGCAGCCATCTTTTAGGTCCTACTGCCAGTCCCCCTCGTTTAGCATTGGCCGAAGCTCAGTAGAGCTTAGGAATGGATCCCAAAGATCTCTAGCGTCTCACTTGAATTCACCACGACTTTCAATGGGTTACCCATCTTTGTCACCTATTAACTCAAGGTACATGTCTCCATACATTCCAAGTCCAAGCAATGGTTCAGTAAGTTACATGGGTTCGTCTAGTCACCAACAGCATTCACTCCGTTATAGTGAGTCAGCCACGAGCTTCTCACCATTTGCATCTGCAAACTCCCTTCCAGAAGTTTAA 1338 0.4342 MGTSNFLLFFFYLVGLCAMTAANVVLIGNDVSLSFDDIEANFAPAVEGSGECGTLYLAEPLDACTELTNKAENLSYVNSPFVLVVRGGCSFEEKVRSAQRAGFKAAIIYDNEDGGVLVAMAGNSDGIRVQAVFVSKTSGEILKKYAGSTNVELWLIASFENSAWSIMAISFISLLAMSAVLATCFFVKRHRIRRERPQASCVREFHGMSSRLVKAMPSLVFTAVLEDSYCTSRTCAICLEDYCVGEKLRVLPCCHKFHTVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSECTPLLSSSLASVASSVLSSGRSSLASSSAIQIARTPSHSSYISHNHSLGSTPYVQPSFRSYCQSPSFSIGRSSVELRNGSQRSLASHLNSPRLSMGYPSLSPINSRYMSPYIPSPSNGSVSYMGSSSHQQHSLRYSESATSFSPFASANSLPEV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0122 445 Gene3D - 24 157 - -
Lal12g0122 445 SUPERFAMILY PA domain 78 152 IPR046450 -
Lal12g0122 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 282 IPR013083 -
Lal12g0122 445 SMART ring_2 235 276 IPR001841 -
Lal12g0122 445 Pfam Ring finger domain 234 277 IPR001841 -
Lal12g0122 445 CDD PA_C_RZF_like 16 163 IPR044744 -
Lal12g0122 445 SUPERFAMILY RING/U-box 218 288 - -
Lal12g0122 445 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Lal12g0122 445 Pfam PA domain 62 142 IPR003137 -
Lal12g0122 445 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Lal12g0122 445 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 381 - -
Lal12g0122 445 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0122 Lal-Chr12 840381 845018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0122 21 444 C3H Transcription Factor Family AT1G22670 48.131 2.50e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0122 K15692 - gmx:100791248 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0122 12 840381 845018 Lal13g0098 13 624009 627560 LSH
Lal12g0122 12 840381 845018 Lal24g0093 24 617411 622912 LSH