Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0117 ATGATGGCCTCCTCCTCCGGCAACCCCTCTAACTCGGAGTTGAATTTCTCAGCCGATTATCCAGCTAAAATCTCTCTCACTCTCGATCAAGTCAACTACTGCACCCAAGCTCTCGTCTTCTTCAAAGACAAGATCCGTAACCCTAACTCCATCCTTCAAGACTTCGATCACTTGCAGGCCAATAGGATAACGCCAACTCAGATGAGGAGAACATGCAATGTTGCTTTTCATGCCGTTAATCTCAACAAAAATCGTTACACTGATGTTGTACCATTTGACAACAATAGAGTTGTTCTCAAATCAAGCACAGATTATAGACCTGCAGCACTTGGCTATATCAATGCAAGCTTCATAGAGACCTCTGGAAATGTCTCAAAGTTTATAGCCACACAAGGTCCATTGCCACACACTTACGAGGATTTCTGGGAGATGCTTATCCAATATCGCTGCCCTGCCATTGTCATGCTTACTAGGTTGGTTGACCATTACAAGATGGTCAAGTGTGGAGATTATTTTCAAGCTGAGGATGGGCCTCGAGAATTTGGTAATATCTCTATTCTCAGCAAATGGACGAATGTTACTGAATCTACACTTGTGCTGCGCCATTTTGAGGTCACCCATAGAGATCAAGAAGACACACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAATGATACATCCTCTGTGCGTGAGATTTTGAAAAGATTATACCATTTGCCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGGTTTATCTCATTCCTCTTTTTTATTTATTTTCCGATAGTGATGACAATAAATCACATGCATATTCGTCTGAGACAAACTCTGTCACTCAGTGCAGGCATAGGTAGAACTGGAACATACTGCACAATTCACAATACAGTTCAGAGAATACTAGCTGGTGATATGTCTGCTTTAGATATTGCTAATACAGTCGCTGGGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACTCAGGATCAGTACATTTTCTGCTATAAAGCTATCATAGATGAGCTGGAAGACCTTGTATCTCAGCAATTCAGTGCTGGACCAAAGGATATTAAGTTGCTTTGCCTCACTTTGAATTCATCTTCCAGTTCTTCCCTTTTATATTTTTCAGTCCCGCAATGCTCATGTATCACTGTAGCAGAGTCTGAAGCTTCAGCATTCTGA 1206 0.4229 MMASSSGNPSNSELNFSADYPAKISLTLDQVNYCTQALVFFKDKIRNPNSILQDFDHLQANRITPTQMRRTCNVAFHAVNLNKNRYTDVVPFDNNRVVLKSSTDYRPAALGYINASFIETSGNVSKFIATQGPLPHTYEDFWEMLIQYRCPAIVMLTRLVDHYKMVKCGDYFQAEDGPREFGNISILSKWTNVTESTLVLRHFEVTHRDQEDTPLSVLHIQYPEWPDHGVPNDTSSVREILKRLYHLPPNLGPIVVHCRFISFLFFIYFPIVMTINHMHIRLRQTLSLSAGIGRTGTYCTIHNTVQRILAGDMSALDIANTVAGFRSQRIGMVQTQDQYIFCYKAIIDELEDLVSQQFSAGPKDIKLLCLTLNSSSSSSLLYFSVPQCSCITVAESEASAF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0117 401 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 10 259 - -
Lal12g0117 401 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 288 357 - -
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 111 118 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 127 147 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 215 232 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 283 301 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 316 331 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PRINTS Protein tyrosine phosphatase signature 332 342 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 351 IPR029021 -
Lal12g0117 401 Gene3D Protein tyrosine phosphatase superfamily 24 360 IPR029021 -
Lal12g0117 401 ProSiteProfiles PTP type protein phosphatase domain profile. 51 349 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 Pfam Protein-tyrosine phosphatase 289 347 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 Pfam Protein-tyrosine phosphatase 80 259 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 CDD PTPc_plant_PTP1 112 343 - -
Lal12g0117 401 SMART ptp_7 216 348 IPR003595 -
Lal12g0117 401 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 289 340 IPR000387 GO:0016311|GO:0016791
Lal12g0117 401 SMART PTPc_3 50 351 IPR000242 GO:0004725|GO:0006470
Lal12g0117 401 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 10 259 - -
Lal12g0117 401 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 288 357 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0117 29 355 Protein tyrosine phosphatase (PTP) family AT1G71860 61.094 7.55e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0117 - - gmx:548044 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0117 12 786577 789348 Lal12g0117 12 786577 789348 ECH