Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0115 ATGGATAGAAAGTTCTTGGCTTTAGTTTTCATCTTCTCTATCTTATTGGTTCAACCACTATGTCTCATTTCTGCTAACATGGAAGGTGATGCTTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTTAACCCTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAGAATTTGCAGTATCTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGATCTGGGGAATCTTACTAACTTAGTGAGCTTGGATCTGTACCTAAACACCTTCACTGGCCCTATCCCAGATTCGCTGGGCAAGTTGTCAAAATTGCGTTTCTTCCGGCTTAATAACAACAGCTTGTCAGGTCCTATACCCATGTCACTGACTAATATTTCATCTCTCCAAGTTCTAGATTTGTCCAATAACCGTCTCTCAGGTGTGGTTCCTGATACTGGCTCCTTCTCATTATTCACCCCTATCAGTTTTGCCAACAACTTGGGTCTATGTGGACCAGTCACTGGCCACCCTTGTCCCGGCTCTCCTCCATTTTCTCCTCCTCCCCCATTTGTCCCTCCACCCCCAATTTCTGCCCCAGGAGGTAGTAGCGCCACTGGGACAATAGCTGGAGGAGTTGCTGCAGGCGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGGAGGAAACCTCAGGAATTTTTCTTTGATGTTCCTGCTGAAGAGGATCCTGAGGTCCATCTTGGGCAGCTGAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTGTACAAGGGACGCTTGGCAGATGGTACATTAGTTGCTGTCAAAAGATTGAAAGAGGAGCGAACACCTGGTGGGGAGCTTCAATTTCAGACTGAGGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTCCGTTTACGTGGTTTTTGCATGACACCAACAGAAAGGCTACTTGTTTATCCTTACATGGCTAATGGAAGCGTAGCCTCATGCTTAAGAGAGCGTCCTCCACATCAAGAACCCATAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCTAAGATTATTCATCGCGATGTAAAGGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTCGGGGATTTTGGATTAGCAAAACTCATGGATTACAAGGACACCCATGTGACAACTGCTGTTCGCGGCACAATTGGACACATAGCTCCGGAATACCTATCTACTGGTAAATCTTCAGAGAAAACCGACGTTTTTGGTTATGGTATCATGCTTCTCGAGCTGATCACTGGACAAAGGGCTTTTGACCTTGCTCGGCTTGCCAACGATGATGATGTTATGCTGCTTGACTGGGTAAAAGGACTGCTGAAAGAGAAAAAGCTAGAAATGTTGGTGGATCCTGATCTACATAACAATTACATAGAAGCAGAGGTAGAACAGTTAATCCAGGTTGCACTACTTTGCACACAAGGTTCCCCGATGGATCGGCCGAAGATGTCAGAAGTGGTGAGGATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAAGTCGAAATTCTGAGGCAGGAAGTGGAGTTGGCCCCTCATCCAAATTCTGATTGGATTCTTGACTCAACTGAAAATTTACATGCAGTTGAGTTATCTGGTCCTAGGTGA 1824 0.4523 MDRKFLALVFIFSILLVQPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNTFTGPIPDSLGKLSKLRFFRLNNNSLSGPIPMSLTNISSLQVLDLSNNRLSGVVPDTGSFSLFTPISFANNLGLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGSSATGTIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPIDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEVELAPHPNSDWILDSTENLHAVELSGPR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0115 607 Pfam Protein kinase domain 285 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0115 607 SUPERFAMILY Protein kinase-like (PK-like) 263 559 IPR011009 -
Lal12g0115 607 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Lal12g0115 607 ProSiteProfiles Protein kinase domain profile. 284 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0115 607 SUPERFAMILY L domain-like 30 173 - -
Lal12g0115 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Lal12g0115 607 Gene3D Ribonuclease Inhibitor 24 194 IPR032675 -
Lal12g0115 607 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0115 607 Gene3D Transferase(Phosphotransferase) domain 1 361 578 - -
Lal12g0115 607 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 607 IPR031048 GO:0004675|GO:0005102|GO:0006468
Lal12g0115 607 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Lal12g0115 607 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 607 - -
Lal12g0115 607 Pfam Leucine Rich Repeat 148 165 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0115 Lal-Chr12 768899 774412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0115 1 607 Receptor kinase-like Gene Family AT1G71830 85.920 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lal12g0115 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0115 K13418 - gmx:100789884 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0115 12 768899 774412 Lal12g0115 12 768899 774412 ECH
Lal12g0115 12 768899 774412 Lal13g0093 13 602154 607848 LSH
Lal12g0115 12 768899 774412 Lal24g0088 24 568615 574053 LSH