Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0112 ATGGCCTTCTCTTCCCACCATCGCTCCGTTTTTGTTGGGAATATACCTTATGGTGTGACAGAGGAACAGCTTATGGAAATCTGCCAGGAGGTTGGCCCTGTTGTCTCTTTCAGGTCTACTTTGGTTTTTTTAGCAGTGGTTTATTTGGATGAAGTATTTCCATCTTCTTTTATCCACAGATTAGTTGTTGATAGAGAAACCGGGAAACCAAAGGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATCAAATTAATGGGCGGCAGTTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGACCAGAGTCATGGTGGGCCTGGTCTGACAGCAATTGTTGATCCTCAGAAACAAGTAGTAAGTCCAGCTGTCCATGGGGAAGCTGCTCACCATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACTGCAGCTCTCGGCGGTGCTCAGTTTAGCATCCAGTCAAATCAAAATGCTTTGCAGAGTCAGTCGGCATTGGCGCACGACCCTTTAACTCTGCATCTCTCCAAAATGTCCAGGAGTCAGCTGATTGATATTCTCACTGATTTCAAGATAATGGCTACACAGAACAGGGACCTTGCTCACCAGCTGTTGCTTTCAAGACCACAGTTACCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCTCAAGTGTTACAAATGCCAAATCTGAGGTTGGTTTCTGATCAAGCCTCACAGCCTTCAATAAAAGAAGGCCAGCCTGGTCAGCCAGCATTACTTCAAACTCTGTCTGGTCTACTACCTCATAGACAGAGCCAGTTGCAGTCTGGTTTGATACCTTATGTTCAAGATGGCCAAGTCACCTCCATACCTCATAATCCTTTGTTTCCTAATCAATTAGCTGTACATCCAAAGCCTCCAGTGCAGCCTCGAATTCCACTCCAACAACATCCAAGCAACCATGTTGTACAGCTTGGAACATTGTCTGGGCCATCTAATTTAATGCTTCCTTCTGTGCATTCCCAGACATTGGGAAGTTTATCTGTCAGGCCTCCAATCCAAGTTCTAGAGGATTTAAATTGGGCCAAGAGAATTAGTACATATTCAAATGCACCTATGGGATTGGAGAAAACGAGCATTGCTCATGATTCTTCAGAATATTTTACACGCCCTTCAAAGCTCATGAAATTGGATGAGGGAAGCAGCATGTCTCTTTCTGCGGGGATTGCAGATCTGCCAATCACTAATGAATCCTTCCATGTTATCGGAAGTAGTTCATTGCCTGTGTGTGCAGCTCCTATAGCAGAAGTGCAGCAAGCACCTCAGCCCCAGGTTCCACCTGATGTAGAGGCTGCTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCGCTGCCACTGGAGCAGCAACAACAGGTCATTCAGCTCCAGCAAGCTCTTCGACGAGATCAAATGCAATCGTCATAG 1530 0.4477 MAFSSHHRSVFVGNIPYGVTEEQLMEICQEVGPVVSFRSTLVFLAVVYLDEVFPSSFIHRLVVDRETGKPKGYGFCEYKDEETALSARRNLQGYQINGRQLRVDFAENDKGNDRNRDQSHGGPGLTAIVDPQKQVVSPAVHGEAAHHQPIGLHIAITAATVMTAALGGAQFSIQSNQNALQSQSALAHDPLTLHLSKMSRSQLIDILTDFKIMATQNRDLAHQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQASQPSIKEGQPGQPALLQTLSGLLPHRQSQLQSGLIPYVQDGQVTSIPHNPLFPNQLAVHPKPPVQPRIPLQQHPSNHVVQLGTLSGPSNLMLPSVHSQTLGSLSVRPPIQVLEDLNWAKRISTYSNAPMGLEKTSIAHDSSEYFTRPSKLMKLDEGSSMSLSAGIADLPITNESFHVIGSSSLPVCAAPIAEVQQAPQPQVPPDVEAALLQQVLNLTPEQLSSLPLEQQQQVIQLQQALRRDQMQSS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0112 509 Gene3D - 3 128 IPR012677 -
Lal12g0112 509 MobiDBLite consensus disorder prediction 108 127 - -
Lal12g0112 509 Gene3D - 178 253 - -
Lal12g0112 509 SMART rrm1_1 9 104 IPR000504 GO:0003723
Lal12g0112 509 SUPERFAMILY RNA-binding domain, RBD 6 124 IPR035979 GO:0003676
Lal12g0112 509 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 4 504 - -
Lal12g0112 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 102 IPR000504 GO:0003723
Lal12g0112 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 38 IPR000504 GO:0003723
Lal12g0112 509 Pfam Hinge domain of cleavage stimulation factor subunit 2 180 251 IPR025742 -
Lal12g0112 509 Gene3D - 465 506 IPR038192 -
Lal12g0112 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 108 IPR000504 GO:0003723
Lal12g0112 509 Pfam Transcription termination and cleavage factor C-terminal 469 503 IPR026896 GO:0031124
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0112 Lal-Chr12 751223 755312 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0112 K14407 - gmx:100794399 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0112 12 751223 755312 Lal13g0089 13 586024 591197 LSH