Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0111 ATGGGTGCAGCTTCAGAATCTTGTTCCACTGAGTTTTTGAGCAAAACGATGTCGTCGATGCCTGGTTTTCGTTTCCATCCTACGGATGAGGAACTTGTTATGTACTATCTTAAGAGGAAGATTTGTGGGAAAAGGCTCAAGCTTGATGTGATTCACGAAACTGATGTGTACAAGTGTGATCCTGAAGAATTACCTGGGCTTTCTGTACTTAAAACTGGAGATAGACAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAACCGAGGAACTAGACACGGGTACTGGAAAGCAACAGGAAAGGATCGTAACATTACCTGCAATAATCGGGCGGTTGGAGTGAAAAAGACACTTGTCTTCTATAGAGGAAGAGCACCTAATGGTGAGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAAGAACTTAGTAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCAGGTCCTAAAAATGGTGAACAATATGGTGCCCCATTTAAAGAAGAAGAGTGGGTAGATGACGATGTTGTAGATTTTAGCATTAACTCAGCTGATTGTGAGATTCCAATTCTCAAGACTGTCGTTGTTGACAATGATCAGCTGCAGCCTTTGTTAGATGATGAAATTGTGGACTTTATTTATGGAATGTTGGATGACGAGCAACGTGTGAATGCTGGCTTTCCTCTGGTTGTTGCTGAAGAAAGACAATGTACTGTGGTGGATCAATTATCTGATGCTGTGATATTTCCTGAGCCAAGTGGTATCTTTCAATCAAATGGCCAGCACCATGATGTGCTGCCCAGCTTTGACTTCAATCAATCTGCAGTTACTTCTCAGCTGCATGTTTCTGATGAAGTTGAGGTCACTTCTGCTCCCAACATTCAAATTGAAGAGTTCCACTTTTGTGAGGAAGACTTCTTGGAAATTAATGATCTCTTCATTGGTACTGAACCTACACAGTCAAATGTCGAAAACCCTGTAGAGAACCTGCAGTTTGCTGATGGGTTAAGTGAATTTGATCTATATTCAGATATGTTTCTTGAGTTGGGGCCAGTCACTCAGGAAACTGTTTCCTGTGCATCTATGAATTCCCCTGAAAGCATTGTTGTTAGTCAAAATTATCAGTGGCAGTCCAATCCAGAGAATGCAAATATAACCGGTGCTGAATTTTGGGTGCACGATGAAAGAAATATCCCGAGTAGAGCTGACAACTTTGTTGATTCTTTCTCTCTACAAACCACAGGTCTTGTATATGAATCTACCAGTTTTCCGACTGAAGGCAATGAGAATCAAAATAGCACAGGGGAAGATGTTGCTACAAGTAGATTCTCCTCTGCTCTCTGGGCATTTGTTGAGTCAATACCTACCACTCCTGCATCAGCTGCTGACAATGCTTTAGTGAACCGAGCATTGAATCGAATGTCTAGCTTCAGCAGCAGGGTGAAGATTAATAACAAACACACAAATATTGCAGCATCAGCATCAGCATCAGCAGGTAAAGACACTACTGCAACTGTGGAGAGAGCAGGCAAAAAGGGGGTTTCATTCCTTTTCTTCCCAATTATTATTGCTCTATGTGCTTGCTTGTGGATTTCTATTGGAACTTTAAGAGTATATTAG 1674 0.4146 MGAASESCSTEFLSKTMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLDVIHETDVYKCDPEELPGLSVLKTGDRQWFFFCHRDRKYPNGARSNRGTRHGYWKATGKDRNITCNNRAVGVKKTLVFYRGRAPNGERTDWVMHEYTMDEEELSRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWVDDDVVDFSINSADCEIPILKTVVVDNDQLQPLLDDEIVDFIYGMLDDEQRVNAGFPLVVAEERQCTVVDQLSDAVIFPEPSGIFQSNGQHHDVLPSFDFNQSAVTSQLHVSDEVEVTSAPNIQIEEFHFCEEDFLEINDLFIGTEPTQSNVENPVENLQFADGLSEFDLYSDMFLELGPVTQETVSCASMNSPESIVVSQNYQWQSNPENANITGAEFWVHDERNIPSRADNFVDSFSLQTTGLVYESTSFPTEGNENQNSTGEDVATSRFSSALWAFVESIPTTPASAADNALVNRALNRMSSFSSRVKINNKHTNIAASASASAGKDTTATVERAGKKGVSFLFFPIIIALCACLWISIGTLRVY 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0111 557 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Lal12g0111 557 PANTHER NAC TRANSCRIPTION FACTORS 2 17 556 - -
Lal12g0111 557 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 556 - -
Lal12g0111 557 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Lal12g0111 557 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Lal12g0111 557 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0111 Lal-Chr12 745396 749887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0111 19 556 NAC Transcription Factor Family AT1G34190 45.675 7.32e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal12g0111 NAM 4.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0111 - - gmx:100794925 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0111 12 745396 749887 Lal24g0087 24 561584 566056 LSH