Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0110 ATGGCGGCTTTGATTTCATCGCCGATGGTTCAGTCTCCGGTGGCTCCGGTGACGGTGATCGCCGGAGGACCGATCGCGAATTCGTCGCTGTATGTGGGAGATCTTGAAGGTAACGTGAATGAGGGGCAATTGTATGATCTGTTCAGCCATGTGGCTCAGGTTGTGTCCATTAGGGTTTGCAGAGATCAGGTTAAGCGCTCCTCTCTCGGTTACGCTTATGTCAACTTCGCTACCGCTCAGGATGCTGCTAACGCCATGGAACTTCTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAGCGAGATCCTAGCATTCGTAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACACATCAATTGATAACAAGGCATTACATGACACTTTTAATGCCTTTGGTACGGTACTTTCCTGTAAGGTGGCTGTTGATAGCAGTGGTCAGTCAAAAGGGTACGGTTTTGTACAGTTGGACTGCGAAGCGGCTGCACAGAATGCCATCAAAGAGTTGAATGGCATGTTGATGAATGGTAAACAAGTCTATGTTGGCCTCTTTGTTCGGCGTGTGGAAAGGGCTCGTACAAATGGATCACCAAAGTTTACAAACGTGTATGTGAAAAATTTATCTGAAACACATACTGATGAGGACCTGAAGCAGCTCTTTGGCCCCTATGGTACAATAACTAGTGCAACCGTCATGAAAGATGCGAATGGGAAGTCTAGGTGTTTTGGTTTTGTGAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAAAGGTTAAATGGAGCTACTATCAATGATGACAGGGTTTTATTTGCAGGTAGAGCTCAGAGAAAATCAGAAAGAGAGGCTGAGTTGAGAGCCAAATTTGAGCAGGAAAGAATTAGCAGATTTGAGAAACTACAAGGTGCTAATTTGTACTTGAAAAATCTTGATGACAGCATCAATGATGAAAAATTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTGGTGCTTGATTCTCATGGGAATAGCAAGGGGTCAGGTTTTGTTGCCTTTTCAACTCCTGAGGAAGCAAATAAAGCTTTGAATGAAATGAATGGAAAGCTGATTGGAAAGAAGCCTTTGTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCTCGTTTGCAGGCTCAATTTTCTCAAATCCGAGCACCTAGTGGAATGGCACCTTTGCCTGCAGGAATTTCTGGATATCATCCAGGAGCTCCAAGACTTGCTCCTCAACAGTTGTACTTTGGTCAAGGAACATCTGGGTTCATTCCACCACAGCCTGCTGGGTTTGGCTTCCAGCAGCAAATCATGCCCGCAATGCGTCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAACTTCAGAGACAAGGTCAGCCTGGGCAGAGGATGGGTGTTCGGCGAGGTGGAAACCTCCAACAGGCGCAACAGAACCAGATGCTACATGGTAACTCCAACCAAGGGTTTAGATATATGGGCAGTGGTAGAAATGACATTGATCCATCTGTAGTTCCTCAAGGTCTGGCAGGTCCAATGATGGCAATGCCCTTTGATGGCTCTGGAGTTACTGCAACTCCTATTGATAATCAGCCTGCCGGAGCATTGTCTGCCACACTTGCCTCAGCTTTGGCTTCTGCTACCCCAGAAAATCAGCGCATGATGCTGGGTGAACATCTATATCCCCTGGTGGAGCGTCTTACATCAAACCAACACACAGCAAAGGTGACGGGGATGTTGCTAGAAATGGACCAGGCAGAGGTAATCCATCTGATTGAATCTCCTGAGGACTTGAAGATAAAGGTGACTGAGGCTATGGTGGTCCTCCATGAAGCTGGATCAGGTTCTGAAATGGGTGATCAACTTGGCTCGCTGGCATTGAATAATTAA 1941 0.4606 MAALISSPMVQSPVAPVTVIAGGPIANSSLYVGDLEGNVNEGQLYDLFSHVAQVVSIRVCRDQVKRSSLGYAYVNFATAQDAANAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFNAFGTVLSCKVAVDSSGQSKGYGFVQLDCEAAAQNAIKELNGMLMNGKQVYVGLFVRRVERARTNGSPKFTNVYVKNLSETHTDEDLKQLFGPYGTITSATVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGATINDDRVLFAGRAQRKSEREAELRAKFEQERISRFEKLQGANLYLKNLDDSINDEKLKDLFSEFGTITSCKVVLDSHGNSKGSGFVAFSTPEEANKALNEMNGKLIGKKPLYVAVAQRKEERKARLQAQFSQIRAPSGMAPLPAGISGYHPGAPRLAPQQLYFGQGTSGFIPPQPAGFGFQQQIMPAMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNLQQAQQNQMLHGNSNQGFRYMGSGRNDIDPSVVPQGLAGPMMAMPFDGSGVTATPIDNQPAGALSATLASALASATPENQRMMLGEHLYPLVERLTSNQHTAKVTGMLLEMDQAEVIHLIESPEDLKIKVTEAMVVLHEAGSGSEMGDQLGSLALNN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0110 646 PANTHER POLYADENYLATE-BINDING PROTEIN 22 634 - -
Lal12g0110 646 SUPERFAMILY RNA-binding domain, RBD 27 193 IPR035979 GO:0003676
Lal12g0110 646 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lal12g0110 646 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lal12g0110 646 SMART rrm2_1 312 384 IPR003954 GO:0003676
Lal12g0110 646 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lal12g0110 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Lal12g0110 646 PANTHER RNA BINDING PROTEIN 22 634 - -
Lal12g0110 646 SUPERFAMILY PABC (PABP) domain 557 630 IPR036053 GO:0003723
Lal12g0110 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Lal12g0110 646 Gene3D - 23 116 IPR012677 -
Lal12g0110 646 CDD RRM4_I_PABPs 310 388 - -
Lal12g0110 646 Gene3D - 550 630 - -
Lal12g0110 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lal12g0110 646 CDD RRM2_I_PABPs 114 189 IPR045305 -
Lal12g0110 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Lal12g0110 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 631 IPR002004 GO:0003723
Lal12g0110 646 Gene3D - 309 410 IPR012677 -
Lal12g0110 646 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 626 IPR006515 GO:0003723
Lal12g0110 646 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723
Lal12g0110 646 CDD RRM3_I_PABPs 206 286 - -
Lal12g0110 646 SMART rrm1_1 312 384 IPR000504 GO:0003723
Lal12g0110 646 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lal12g0110 646 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lal12g0110 646 SMART rrm1_1 208 281 IPR000504 GO:0003723
Lal12g0110 646 Gene3D - 117 190 IPR012677 -
Lal12g0110 646 CDD RRM1_I_PABPs 29 108 - -
Lal12g0110 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Lal12g0110 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Lal12g0110 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Lal12g0110 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lal12g0110 646 Gene3D - 199 308 IPR012677 -
Lal12g0110 646 SMART poly_2 565 629 IPR002004 GO:0003723
Lal12g0110 646 SUPERFAMILY RNA-binding domain, RBD 206 391 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0110 Lal-Chr12 737954 744289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0110 1 626 Eukaryotic Initiation Factors Gene Family AT1G22760 57.895 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0110 K13126 - gmx:100783163 1066.6