Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0106 ATGACAACCGGAAAGGCAAAGAGAATAATATTTATTATAGGTGGTTCAATCCCTGAAGAGATTTTCAGTTTGAAGAAGCTGAGTAAGCTTGTGCTTCTTGGAAACTCCTTAACTGGAAGGTTGCCACCAAGTGTTGCAAATTGTGAATCTTTAGCGAGGCTGAGGGTTGGAGAAAACCTGCTTTCAGGAAAGATTCCTAAAGAGATAGGCCAACTTCAGATTCTGGTGTTTCTTGACTTGTACATGAACAACTTCTCTGGAAGTTTACCTGAGGAGATTGCAAACATCACAGTTCTTGAGCTATTGGATGTACATAAGAACTACCTAACTGGGGTGATTCCATCTAAGATCAGTGAACTTGAAAATTTGAAGCAACTTGATCTCAGTAGAAACACTTTGACAGGTGAAATTCCTTGTAGTTTTGGAAAGTTAAGTTATTTGAATAAGCTTATCCTCAACAATAATCTGCTGACAGGATCAATTCCAAAATCCATTAGAAACTTCCAGAAGCTAACTCTGCTTGATTTGAGTTACAACAACCTCTCCTTTCCGAGATTGGTTATTTTGGAGTTGATCTCAAATGCATTCACAGGAGAAATCCCAGACTCATTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTAATAATATGCTTCATGGAACAATCAAGGTTCTTCGTTCTCTCACTAGTCTCACTTCCCTCAACATCTCCTACAACAACTTCTCAGGTCCTATGCCAGTAACTCCTTTCCTCAAAACTCTATCTTCTTATTCATATCTTCAGAACCACCATCTATGCCAGTCCATTGATGGAACTACATGTTCTTCAAATTTTATTAGAAAGAATGATTTACAATCTGCAAAAACCATAGCTTTGATCTTGGTGATTCTAGATTCAGTTACCATAATTGTCATTGCATCATGGATTACGGTTGAGAAAACATTGGGGACATCATCAGGGGCTGAGGATTTATCTTATCCTTGGACCTTCATCCCATTTCAAAAGCTAAACTTCAGCATAGGTAACATCTTGAATTGCTTGAAGGAAGAGAATGTGATTAGAAAAGGTTGTTCTGGGACTGTGTATAAGGCTGAGATGCCTAATGGAGAGTTGATAGCAGTGAAGAAGCTCTGGAAAGCAAACAAAGAAGATGAAACTATAGATTCTTTTGCTGCAGAAATTCATATTCTTGGATACATTCGGCATAGGAACATTGTGAAGCTCCTCGGCTATTGTTCTAACAGGAGTATTAAGCTTCTTCTCTATAACTTCATCCCAAATGGTAATCTAAGACAGCTTTGA 1308 0.3815 MTTGKAKRIIFIIGGSIPEEIFSLKKLSKLVLLGNSLTGRLPPSVANCESLARLRVGENLLSGKIPKEIGQLQILVFLDLYMNNFSGSLPEEIANITVLELLDVHKNYLTGVIPSKISELENLKQLDLSRNTLTGEIPCSFGKLSYLNKLILNNNLLTGSIPKSIRNFQKLTLLDLSYNNLSFPRLVILELISNAFTGEIPDSLSALTQLQSLDLSNNMLHGTIKVLRSLTSLTSLNISYNNFSGPMPVTPFLKTLSSYSYLQNHHLCQSIDGTTCSSNFIRKNDLQSAKTIALILVILDSVTIIVIASWITVEKTLGTSSGAEDLSYPWTFIPFQKLNFSIGNILNCLKEENVIRKGCSGTVYKAEMPNGELIAVKKLWKANKEDETIDSFAAEIHILGYIRHRNIVKLLGYCSNRSIKLLLYNFIPNGNLRQL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0106 435 PANTHER UNNAMED PRODUCT 14 435 - -
Lal12g0106 435 ProSiteProfiles Leucine-rich repeat profile. 209 231 IPR001611 GO:0005515
Lal12g0106 435 Gene3D Ribonuclease Inhibitor 12 279 IPR032675 -
Lal12g0106 435 ProSiteProfiles Protein kinase domain profile. 349 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0106 435 SUPERFAMILY Protein kinase-like (PK-like) 327 434 IPR011009 -
Lal12g0106 435 PRINTS Leucine-rich repeat signature 123 136 - -
Lal12g0106 435 PRINTS Leucine-rich repeat signature 207 220 - -
Lal12g0106 435 Pfam Leucine rich repeat 184 243 IPR001611 GO:0005515
Lal12g0106 435 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Lal12g0106 435 Pfam Protein tyrosine and serine/threonine kinase 351 434 IPR001245 GO:0004672|GO:0006468
Lal12g0106 435 Gene3D Phosphorylase Kinase; domain 1 329 426 - -
Lal12g0106 435 PANTHER - 14 435 - -
Lal12g0106 435 SUPERFAMILY L domain-like 18 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0106 Lal-Chr12 725743 727175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0106 13 435 Receptor kinase-like Gene Family AT5G56040 42.032 2.52e-91 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal12g0106 PK_Tyr_Ser-Thr 1.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0106 - - ccaj:109812175 657.136