Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0098 ATGGAAGAGTACAAACCGGGCCGCGGAACGTGGATGTATTATCATCCTAAAAGGGACACTAACCTAACCCTAATTAGCTTGAAGAATTCAGATCCCTCAATCGGCCAAGGACAACAGCGATTGCGCCAACCCTCAATCTCTGACAACACTTCCCCAACGAAAATGTCTCTGGTTGCAAACGAAGAATTCCAGCACATTCTGCGTGTGCTCAATACCAATGTTGATGGGAAGCAGAAGATCATGTTCGCTCTTACCTCAATCAAGGGTATTGGAAGGAGACTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAGAGAGCTGGTGAGTTAACTGCTGCTGAGCTAGATAACATAATGACTGTTATTGCGAACCCACGACAATTCAAGATCCCAGACTGGTTTTTGAATAGGAAGAAGGATTATAAGGATGGCAAGTTTTCTCAAGTTGTTTCTAATGCACTTGACATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCATCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTCCGTGGGCAGCATACCAAGACTACTGGCCGCAGAGGAAAAACTGTTGGTGTGTCTAAGAAGCGTTAA 621 0.4557 MEEYKPGRGTWMYYHPKRDTNLTLISLKNSDPSIGQGQQRLRQPSISDNTSPTKMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIACKKADVDMNKRAGELTAAELDNIMTVIANPRQFKIPDWFLNRKKDYKDGKFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0098 206 Gene3D - 55 134 - -
Lal12g0098 206 Gene3D 30s ribosomal protein s13, domain 2 146 196 IPR027437 -
Lal12g0098 206 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 53 206 - -
Lal12g0098 206 Hamap 30S ribosomal protein S13 [rpsM]. 66 206 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal12g0098 206 SUPERFAMILY S13-like H2TH domain 67 206 IPR010979 GO:0003676
Lal12g0098 206 ProSitePatterns Ribosomal protein S13 signature. 175 188 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal12g0098 206 ProSiteProfiles Ribosomal protein S13 family profile. 69 199 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal12g0098 206 MobiDBLite consensus disorder prediction 32 52 - -
Lal12g0098 206 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 53 206 - -
Lal12g0098 206 Pfam Ribosomal protein S13/S18 68 196 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0098 Lal-Chr12 657554 659269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0098 55 206 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.737 8.77e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0098 K02964 - jre:109018528 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0098 12 657554 659269 Lal12g0098 12 657554 659269 ECH
Lal12g0098 12 657554 659269 Lal13g0081 13 529110 531211 LSH
Lal12g0098 12 657554 659269 Lal24g0082 24 529890 537564 LSH