Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0095 ATGGCTGAACCTTCCAAGGTCATTCATGTTCGAAATGTGGGGCAGGAGATAACTGAAAATGATTTGCTTCAGCTGTTTCAGTCTTTTGGAGTCATAACAAAGCTAGTGATGCTGCGAGCAAAGAATCAGGCTCTTATCCAAATGCAAGATGTTGCTACGGCAGTTAGTGCTTTACAATTTTATGAAAATGTTCAGCCAAACATAAGGGGAAGGAATGTTTATATCCAGTTTTCCTCACATCAGGAACTAGCACCAATGGATCAAAATCAAGGACGAGGAGATGAGGTTGGTATTTTTTGTCCAAACCGAATTCTCTTAGTTACAATCCATCATGTGCTTTATCCTATGACAGTGGATGTGCTCCATCGAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACCTTTCAGAAGTCAGCTGGCTGTCAGGCTCTCATTCAGTATCAATCACGTCAGAGTGCTGTTACAGCGAAAAATGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCAAATCTTCCTACTGAGCAGAAAGGCAGACCTTCACAAATGGCCAATGCTGAAGCTATTGCAGCTGCCTTTGGGGGAAATTTGCCTCATGGAATAACGGGGGAAAATGACAGGTGTACCATTCTTGTCTCAAATCTGAATACAGATAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGAATTAAAATTCTCCGGAACAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAATCTGAATTGGCAGTACACTTTCTGAAGGGAGCAATGCTGTTTGGAAAGCAGTTAGAGGTGAACTTCTCAAAACATGCAATGATACTCCAAGGTGCTGACACACGCGAGTATGGCAATTCGAACCTGAATCGATTCAATCGTAATGCTGCAAAGAATTACCGATACTGCTGCTCTCCGACGTGGATGATCCATTTGTCCACTCTCCCGCAAGACATCACTGAAGAGGATATTGTTAGCCTGGTAGAGGACCATGGAGTCATTCTGAATTGCAAGGTCTTCGAAATGAATGGGAAAAAGCAAGCTCTTGTTCAGTTCGAGAACGAGGAGCAAGCTACTGAAGCTCTTGTGTGCAAGCACGCAACATCACTTTCGGGTTCAGTAGTCCGGATCTCCTTCTCTCAACTGCAGAACATATGA 1275 0.4298 MAEPSKVIHVRNVGQEITENDLLQLFQSFGVITKLVMLRAKNQALIQMQDVATAVSALQFYENVQPNIRGRNVYIQFSSHQELAPMDQNQGRGDEVGIFCPNRILLVTIHHVLYPMTVDVLHRVFSPHGSVEKIVTFQKSAGCQALIQYQSRQSAVTAKNALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQMANAEAIAAAFGGNLPHGITGENDRCTILVSNLNTDRIDEDKLFNLFSIYGNIVRIKILRNKPDHALVQMGDGFQSELAVHFLKGAMLFGKQLEVNFSKHAMILQGADTREYGNSNLNRFNRNAAKNYRYCCSPTWMIHLSTLPQDITEEDIVSLVEDHGVILNCKVFEMNGKKQALVQFENEEQATEALVCKHATSLSGSVVRISFSQLQNI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0095 424 SMART rrm1_1 348 417 IPR000504 GO:0003723
Lal12g0095 424 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lal12g0095 424 SMART rrm1_1 106 175 IPR000504 GO:0003723
Lal12g0095 424 SMART rrm1_1 238 307 IPR000504 GO:0003723
Lal12g0095 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lal12g0095 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 311 IPR000504 GO:0003723
Lal12g0095 424 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 211 - -
Lal12g0095 424 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 210 423 - -
Lal12g0095 424 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Lal12g0095 424 SUPERFAMILY RNA-binding domain, RBD 344 422 IPR035979 GO:0003676
Lal12g0095 424 Pfam RRM-like domain 103 179 IPR021790 -
Lal12g0095 424 Gene3D - 328 423 IPR012677 -
Lal12g0095 424 Gene3D - 234 327 IPR012677 -
Lal12g0095 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 414 IPR000504 GO:0003723
Lal12g0095 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Lal12g0095 424 CDD RRM4_PTBPH3 340 418 - -
Lal12g0095 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 316 - -
Lal12g0095 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 421 IPR000504 GO:0003723
Lal12g0095 424 SUPERFAMILY RNA-binding domain, RBD 230 316 IPR035979 GO:0003676
Lal12g0095 424 Gene3D - 102 206 IPR012677 -
Lal12g0095 424 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 211 - -
Lal12g0095 424 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 210 423 - -
Lal12g0095 424 Gene3D - 1 95 IPR012677 -
Lal12g0095 424 SUPERFAMILY RNA-binding domain, RBD 106 202 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0095 Lal-Chr12 643263 649568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0095 K14948 - gmx:100819672 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0095 12 643263 649568 Lal12g0095 12 643263 649568 ECH
Lal12g0095 12 643263 649568 Lal13g0074 13 493045 499466 LSH
Lal12g0095 12 643263 649568 Lal24g0079 24 508069 514324 LSH
Lal9g0874 9 6553234 6560923 Lal12g0095 12 643263 649568 PCT
Lal12g0095 12 643263 649568 Lal9g0874 9 6553234 6560923 PCT