Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0094 ATGGATATTAAGGGGAGACTTGTTGCTGGCTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTTCCAGAGTTAGCCTCTCTCACCTCTTCTATCTTTTTCTTGTTTCTCATGCTGAATTCCCAACTCATGTGAACAATGTTACAGAATTGAGTGGCCAAATTTGCCAGATCTGTGGGGATGATATAGAAGTTACAGTAGATGGAGAGTCCTTTGTTGCTTGCAATGAGTGTGCATTCCCAGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACCAAGTTTGCCCTCAGTGCAAAACAAGATACAAACGCATCAAGGGTAGCCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATATTGATGATTTGGAGAATGAGTTTGACATTGGAAGTAATATCAGGCGTGACCCTTGTCACAATGCTGAGGCCATGCTTGCTGCTCGCCTTAACATTGGCCACAATAGTTCACATGTGAATGCTTCAGTGGTCACACCATCAGAGTTAGATGCAGCTTCTGTGGTTGCTGATATCCCTCTCCTCACATGTGGTCATGAGGATGTTGGGATTTCTGATGATAAGCATGCTCTAATCATTCCTCCATTCATGCCTGGAGGGAAACGGGTTCATCCAATGCCTTTTCATGATTCAGCTGTACCAGTTCAATTCAGACCTATGGACCCTAAAAAAGATTTAGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGGATGGAGGAGTGGAAGAAAAAACAGAATGAAAAGCTTGAGGTGGTGAAACATGAAGGGGGTAATGATGGTGGGAAAAATGGTGATGAACTTGATGACCCTGATTTGCCTAAAATGGATGAGGGAAGGCAACCACTGTGGAGGAAGTTACCAATTAGTCCAAGCAAGATTAATCCGTATCGAATCATAATAGTTCTCCGGATTGCTATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCAGTCAATAATGCATATGGATTGTGGTTGACATCGGTAATATGTGAAATTTGGTTTGCTGTGTCATGGATTTTGGATCAGTTTCCAAAATGGTGCCCAATTGAGCGAGAAACATACCTTGATCGTTTATCACTCAGGTACGAGAAAGAAGGAAAGACATCTGAATTGGCTGATATAGACGTATTTGTTAGTACAGTAGATCCTTCAAAAGAACCTCCACTTATCACTGCAAACACAGTTCTGTCTATCCTTGCTGTAGATTATCCAGTAGACAAAGTTTCATGCTATGTCTCAGATGATGGTGCAGCTATGCTTACATTTGAAGCCCTGTCAGAAACATCTGAGTTTGCAAGGAAGTGGGTTCCATTCTGTAAGAAGTTCAGCATTGAACCACGGGCTCCGGAATGGTATTTTGCTCACAAGGTTGACTATCTCAAACACAAAGTGGATGCATCATTTGTCAGGGAGCGACGGGCTATTAAGATTGCATTCTCAATTTTGTTGGCACAGAGGGAGTATGAAGAGTTCAAAGTGCGGATAAATGCGCTGGTTGCAATGGCGCAGAAGGTTCCTGAAGATGGTTGGACGATGCAGGATGGGACTCCATGGCCAGGGAACAATGTCAGAGATCATCCTGGAATGATACAAGTTTTCCTTGGTCAAAATGGAATTCGTGATATTGAAGGAAATGAGTTACCTCGTCTTGTGTACGTGTCTCGTGAGAAAAGGCCTGGATATGAGCACCATAAGAAAGCTGGTGCTATGAATGCTCTGGTGCGAGTCTCAGCAGTCATATCAAATGCTCCCTACATATTGAATGTGGATTGTGATCACTACATAAACAACAGCAAGGCACTACGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAACATGAAAGGTTTAGATGGCATCCAAGGGCCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCACTCTATGGATTTGATGCTCCTTCTAAGAAGAAATCGCCACGGAAAACATGTAACTGTTGGCCCAGATGGTGCTGCCTGTGTTGTGGATCTAGAAATAAAAATAGGAAGGTGAAATCAAGTGCCAAAATGAATAAAGATGCTACAAAGCAAATAAATGCTTTACAAAATATTGAAGCTGATGAAACGTACCAATTTTTAGTGTCACTTAGTGTTGCTCTTGAAATCTCAATCACAGGAATTGACAGTGAGAAGTCATCATTAACTTATGGGCTAAAATTGGAGAAAAAATTTGGGCAATCAGTTGTTTTCATATGTTCAACACTTTTGGAGGATGGAGGCAGTCTAAAAGCAGTATCTTCTGCATCACTTTTGAAAGAAGCCATCCATGTGATTGGTTGTGGTTATGAAGATAAGACAGAATGGGGGAAAGAGGTTGGATGGATATATGGGTCAGTTACTGAGGATATTTTAACAGGTTTCAAGATGCACTGTCATGGTTGGAGATCTGTTTATTGCATTCCTAAAAGGCCTGCTTTTAAGGGATCAGCTCCTATAAATCTCTCAGACCGTTTGCACCAAGTTCTCAGGTGGGCTCTTGGATCTGTGGAGATCCTTTTTAGTAGGCATTGTCCTATATGGTATGGTTATGACTGTGGCTTGAAATGGTTGGAGCGGTTTTCTTACATAAACTCCGTCGTTTATCCTTTGACATCACTTCCCTTAATCACCTATTGCACCTTGCCAGCTATCTGTCTTCTCACTGGCAAATTCATAGTCCCCGAGATTAGCAACTATGCCAGTATCATATTCATAGCTCTATTCATCTCTATAGCTGCAACTAGCATCTTGGAAATGCAGTGGGGAGGAGTTGGCATACATGACTGGTGGAGGAATGAACAATTCTGGGTCATTGGTGGTGCCTCATCACACTTGTTTGCTCTATTCCAAGGTTTGCTTAAGGTCTTAGCAGGAGTTAATACAAACTTCACTGTCACGTCAAAAGCAGCCGATGATGGAGAATTTGCTGATCTATACATCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACATTGCTTATCATTAACATAATCGGAGTTATCGTAGGCATTTCGGATGCAATAAACAATGGCTATGATTCATGGGGTCCTCTATTTGGTAAACTTTTTTTCGCTCTTTGGGTCATTCTCCATCTTTACCCTTTCCTCAAGGGAGTTATGGGAAAACAGGAAGATCTAGAGTCTGTTGGTGAGAGAACCGTTAATGCCAAAAGGACTAGTGTAGCAGATCCACACTTTCTTGGATCTGTCACTATCTGTAACCAAATAATTGATAAAGATGTTGGATTCTTCAATGGAAATTTTAATGCCGCAGAAGCAAGTTCAGGAAGGATGTCTCACAGGAAGTTCGAACACCCAAGGCATGGTTCACTTGGATTTCTTCCTAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTTAAGGCATTCCCAAAAGATGACCAAACCAAGTCACCTAAGCTCACTGCTTTCTTGGGCTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTTGACAAACCTGGTTCAAAGCTCCACAAGAAGGAAACTTGTGAGCCTGTCACCATTATTGAAACTCCTCCAATGGTTATTGTTGGAGTTGTTGGTTACGTCAAAACTCCCCGTGGTCTTCGTACATTGAACACTGTCTGGGCTCAGCATTTGAGTGAGGAGATCAAGCGTAGGTTCTATAAGAATTGGAGCAAGTCCAAGAAGAAGGCTTTCACAAAGTACTCAAAGCAATATGAATCTGAAGATGGCAAGAAAAACATTCAGTCACAGCTTGAGAAAATCAGCAAGTATGCCACTGTTGTCCGTGTTCTGGCTCACACTCAGATCAGGAAAATTAAGGGGCTGAAGCAGAAGAAAGCCCATATCATGGAGATTCAGGTAAACGGTGGGACTATTCCACAGAAGGTGGACTTTGCATACAGTTTCTTCGAGAAACAGGTCCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACCTCATTGGTGTGACAAAAGGTAAGGGTTATGAAGGCGTGGTCACCCGTTGGGGTGTTACCCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCTTTCACTGTTGCTAGAGCTGGTCAGAATGGATACCACCACAGAACTGAGTTGAACAAGAAGATTTACAGGCTTGGCAAAGCTGGACAAGAGTCTCACGATGCTGTTACCGATTTTGATAGGACTGAGAAAGATATAACTCCAATGGGTGGGTTCCCACACTATGGAATTGTGAAAGATGATTATCTGATGATTAAGGGAGGGTGTGTTGGTCCTAAGAAAAGGGTTATTACACTGCGCCAATCCTTGCTTAAGCAGACATCTCGTCTTGCACTTGAGGACATCAAGCTCAAGTTTATTGATACATCTTCAAAGTTTGGCCATGGTCGTTTCCAGACAACAGAAGAGAAGCAAAAGTTCTTTGGTCGCCTCAAAGCATAA 4614 0.4248 MDIKGRLVAGSHNRNEFVLINADETSRVSLSHLFYLFLVSHAEFPTHVNNVTELSGQICQICGDDIEVTVDGESFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDIGSNIRRDPCHNAEAMLAARLNIGHNSSHVNASVVTPSELDAASVVADIPLLTCGHEDVGISDDKHALIIPPFMPGGKRVHPMPFHDSAVPVQFRPMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKLEVVKHEGGNDGGKNGDELDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAILGLFFHYRILHPVNNAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKTSELADIDVFVSTVDPSKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAHKVDYLKHKVDASFVRERRAIKIAFSILLAQREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGIRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAVISNAPYILNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPSKKKSPRKTCNCWPRWCCLCCGSRNKNRKVKSSAKMNKDATKQINALQNIEADETYQFLVSLSVALEISITGIDSEKSSLTYGLKLEKKFGQSVVFICSTLLEDGGSLKAVSSASLLKEAIHVIGCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILFSRHCPIWYGYDCGLKWLERFSYINSVVYPLTSLPLITYCTLPAICLLTGKFIVPEISNYASIIFIALFISIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFADLYIFKWTSLLIPPLTLLIINIIGVIVGISDAINNGYDSWGPLFGKLFFALWVILHLYPFLKGVMGKQEDLESVGERTVNAKRTSVADPHFLGSVTICNQIIDKDVGFFNGNFNAAEASSGRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDQTKSPKLTAFLGYKAGMTHIVREVDKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWSKSKKKAFTKYSKQYESEDGKKNIQSQLEKISKYATVVRVLAHTQIRKIKGLKQKKAHIMEIQVNGGTIPQKVDFAYSFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGQESHDAVTDFDRTEKDITPMGGFPHYGIVKDDYLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTEEKQKFFGRLKA 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0094 1537 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 40 1097 - -
Lal12g0094 1537 ProSitePatterns Ribosomal protein L3 signature. 1360 1383 IPR019926 -
Lal12g0094 1537 SUPERFAMILY RING/U-box 46 127 - -
Lal12g0094 1537 Gene3D Translation factors 1192 1533 - -
Lal12g0094 1537 CDD mRING-HC-C4C4_CesA_plant 57 107 - -
Lal12g0094 1537 Gene3D Ribosomal protein L3, domain 3 1149 1422 IPR044892 -
Lal12g0094 1537 MobiDBLite consensus disorder prediction 266 287 - -
Lal12g0094 1537 Pfam Zinc-binding RING-finger 51 125 IPR027934 -
Lal12g0094 1537 Gene3D - 1231 1355 - -
Lal12g0094 1537 Pfam Ribosomal protein L3 1149 1518 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lal12g0094 1537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 132 IPR013083 -
Lal12g0094 1537 SUPERFAMILY Translation proteins 1152 1518 IPR009000 -
Lal12g0094 1537 Pfam Cellulose synthase 389 1096 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal12g0094 1537 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 40 1097 - -
Lal12g0094 1537 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 546 692 IPR029044 -
Lal12g0094 1537 SUPERFAMILY Nucleotide-diphospho-sugar transferases 402 688 IPR029044 -
Lal12g0094 1537 ProSiteProfiles Zinc finger RING-type profile. 59 105 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0094 Lal-Chr12 633689 642166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0094 1 1100 Glycosyltransferase AT5G64740 74.864 0.0 1666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0094 K10999 - gmx:100806786 2546.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0094 12 633689 642166 Lal12g0094 12 633689 642166 ECH
Lal12g0094 12 633689 642166 Lal13g0073 13 468324 471397 LSH