Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0088 ATGTCGTTCCGTAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTGTCAAGGAGGAGTTTTGAAATAAGGCTTCCCGGCCATAATAAGGCCAAGTCGCGCAGTTCAGTACATGAGTTGCAGGAACAGCCTCCGGTTATACAGAATAGCCGATGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAAGTGAGAGTACCTGGCCTGGCCGTAAGCATGTGGTTGCTTGTGCGGCTGTGTGTAAGTCGTGGAGGGATATGTGCAAAGAAATTGTCAATAGTCCTGAATTCTGTGGGAAGATCACTTTTCCTGTTTCTCTGAAGCAGCCTGGCTATAGAGATGGAACAATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCGCCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTGGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACGAGGAGAACGACATGCACAGAGTATATCATATCAATGAATGCAGATAATATATCTAGATCTAGTAGCACTTACATCGGAAAACTGAGGTCAAATTTTCTTGGCACTAAATTTATAATTAGTGACACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCACCGGGCCGAAGCCAAAGGTTTTATTCGAAAAAGGTTTCTCCAAAGGTCCTTAGTGGCAGCTACAATATTGCGCAGGTCACTTATGAGTTAAATGTCCTTGGTACTAGAGGGCCACGGAAGATGAACTGCACAATGCACTCAATCCCTGCATCATCCCTTGAGCCTGGTGGCACTGTCCCCGGCCAGCCAGAACTCCTTTCTCGCACCCTTGGGGATTCTTTCCGGAGTATATCCTTCTCAAAATCATTTGCTTCAACCGAGTTTAGCAGCGCTAGGTTCTCAGACATAATCGGAGCTGGCAATGAAGCGGAAGAGGGAAAGGAGAGACCCCTAGTTCTTAAGAACAAGTCTCCAAGATGGCATGAACAGATGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACAGTTGCCTCTGTCAAAAACTTTCAGCTGATTGCTGCAACACAGCCTGTAGCGGCTGGTGCTCCTTTGGCAACAGGACCTACGCCATCTCAGGCAACCCAGTCTGATCATGACAAGATTATTCTTCAGTTCGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCCGCTTTTCAAGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCGTGTGAATAG 1290 0.4651 MSFRSIVRDVRDGFGSLSRRSFEIRLPGHNKAKSRSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKSWRDMCKEIVNSPEFCGKITFPVSLKQPGYRDGTIQCFIKRDKSKLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMNADNISRSSSTYIGKLRSNFLGTKFIISDTQPPYNNAQLSPPGRSQRFYSKKVSPKVLSGSYNIAQVTYELNVLGTRGPRKMNCTMHSIPASSLEPGGTVPGQPELLSRTLGDSFRSISFSKSFASTEFSSARFSDIIGAGNEAEEGKERPLVLKNKSPRWHEQMQCWCLNFRGRVTVASVKNFQLIAATQPVAAGAPLATGPTPSQATQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0088 429 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Lal12g0088 429 PANTHER TUBBY-RELATED 1 429 - -
Lal12g0088 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Lal12g0088 429 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Lal12g0088 429 Pfam Tub family 114 424 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Lal12g0088 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Lal12g0088 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lal12g0088 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 429 - -
Lal12g0088 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Lal12g0088 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Lal12g0088 429 Gene3D - 48 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0088 Lal-Chr12 607680 612063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0088 1 429 TUB Transcription Factor Family AT1G76900 69.651 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal12g0088 Tub 3.6e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0088 K19600 - gmx:100817532 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0088 12 607680 612063 Lal12g0088 12 607680 612063 ECH