Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0087 ATGCAGCTGGGAGACCCAACCATGTTGGAAACCTCCTCCGGTGAGGTTGTGGCGGTGCACGATGGTGCCGACGGGGGCAGTGAAGATAAGGGAATTATAAGAGATGATAGTGGCGGTGGTCATGGAGATGAGAGTCATGAGAAGATGAACGGTGGAGGAAACCGGTGGCCCCGCCAAGAAACATTGGCTCTGTTGAAGATAAGGTCGGATATGGATGCTGTGTTTCGTGATTCTAGTCTTAAGGGTCCACTCTGGGAAGATGTTTCAAGGAAACTAGCAAGTCTTGGTTATCACCGAAGTGCAAAGAAATGCAAGGAAAAATTTGAGAACGTGTACAAGTACCACAAGAGAACAAAAGAAAGCAGAAGTGGGAAATCAGAAGGAAAAACATATAGATTCTTTGATCAATTACAAGCCCTTGAGAAACAATTCAATGTCTCTTCTTACCCGCCAAAACCACAACCACAACCTACTTTTGCAACAACAAACAACAACACTGTGACATTGCCAACAAAGCCTAGTGATACCACTGCACCAATCTCTTTTATTTCCACCATCACTGTTCCATCCATAAACCCTACACTCATTTCTCCACCTCCACCACCATTACCACTACCAACCAATTCTACCACTAATATCACTTTCGCAACACCAACTATGGTAACCAACCCTAGCAATGATAATAACAACAACAACAATGTTTCATATTCTTTGCCCTACATGAACCTTTTCTCTACCTCTTCTTCTACATCTTCTTCCACGGCTTCCGACGAAGACTTGGAAGAGAAATACAAGAAGAAGAGGAAATGGAAGGACTACTTCCGAAGGCTCACAAGGCAGGTCTTAGCCAAACAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATCGATAAAAGGGAGAGAGAACATATGGTGCAACAAGACGCTTGGAGGATACAAGAGATGGAGAGGATCAATAGAGAACATGACCTACTTGTGCAAGAAAGAAGAACTGCAGCAGCAGAAGATGCTGCAGTTGTTACATTTTTGCAGAAGTTGTCTGGTCAGCAAAATCTAACAAAACAACCTTTTGAGCAAACCGTTTCTGCAAAATTAATATCGCCACCACTAATATCGCAAGTAGTACAACCTCAACCACAACTACCACAACAACAGCATCATCAGTTATCGTTGATGGTAATGAACAACAACGTTGAAATCCAGAGAACAAATAATGGTAATAATAGTGGTGATCCATTAAACTCTCCTTCTAGGTGGCCAAAGGCAGAAGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGATGCTAAGTATCAAGAGAATGCACCAAAAGCTCCATTCTGGGAGGATATATCAGCTGGGATGCAAAGGCTTGGGTACAATAGGAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAAAAGGTGAAGGAAAGTAACAAGAAAAGGCGCGAGGATAGTAAAACTTGTCCCTATTTTGAAGAGCTTGATGCTCTATACAAAGAAAAGAGCAAAACTCAAAACCCCTTTGGTGGTGTTGCTTCTGCGTTCCACAATGTTAATCCAAATGAGATGATGGAGCCATTGATGGTGCAACCAGAACAGCAATGGAGGCCACCCTCTCATGATGAGAATAATGAAGGTAAAAAAAGAGAAAGGGAAAAGCTAGCAGATGAAGGAGATAGCATGGAAGATGATAACGTGGATGTTGATGAAGAAGAAGAAGAAGAAGAAGGAGATAGCATGAAAGATGAAGAAGGAGGAGGTAACCATTATGAGATTGAGACAAATACACTTCCTTCAGTGGACATAGTTGAATGA 1836 0.4227 MQLGDPTMLETSSGEVVAVHDGADGGSEDKGIIRDDSGGGHGDESHEKMNGGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEDVSRKLASLGYHRSAKKCKEKFENVYKYHKRTKESRSGKSEGKTYRFFDQLQALEKQFNVSSYPPKPQPQPTFATTNNNTVTLPTKPSDTTAPISFISTITVPSINPTLISPPPPPLPLPTNSTTNITFATPTMVTNPSNDNNNNNNVSYSLPYMNLFSTSSSTSSSTASDEDLEEKYKKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREREHMVQQDAWRIQEMERINREHDLLVQERRTAAAEDAAVVTFLQKLSGQQNLTKQPFEQTVSAKLISPPLISQVVQPQPQLPQQQHHQLSLMVMNNNVEIQRTNNGNNSGDPLNSPSRWPKAEVHALIRLRTSLDAKYQENAPKAPFWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFEELDALYKEKSKTQNPFGGVASAFHNVNPNEMMEPLMVQPEQQWRPPSHDENNEGKKREREKLADEGDSMEDDNVDVDEEEEEEEGDSMKDEEGGGNHYEIETNTLPSVDIVE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0087 611 MobiDBLite consensus disorder prediction 545 565 - -
Lal12g0087 611 PANTHER - 10 600 - -
Lal12g0087 611 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 10 600 - -
Lal12g0087 611 Coils Coil 315 335 - -
Lal12g0087 611 MobiDBLite consensus disorder prediction 566 588 - -
Lal12g0087 611 Pfam Myb/SANT-like DNA-binding domain 54 140 IPR044822 -
Lal12g0087 611 Pfam Myb/SANT-like DNA-binding domain 417 504 IPR044822 -
Lal12g0087 611 Gene3D - 419 480 - -
Lal12g0087 611 Gene3D - 56 117 - -
Lal12g0087 611 MobiDBLite consensus disorder prediction 1 56 - -
Lal12g0087 611 MobiDBLite consensus disorder prediction 22 53 - -
Lal12g0087 611 CDD GT1 54 119 - -
Lal12g0087 611 MobiDBLite consensus disorder prediction 539 611 - -
Lal12g0087 611 CDD GT1 417 482 - -
Lal12g0087 611 ProSiteProfiles Myb-like domain profile. 54 112 IPR001005 -
Lal12g0087 611 SMART sant 415 477 IPR001005 -
Lal12g0087 611 SMART sant 52 114 IPR001005 -
Lal12g0087 611 ProSiteProfiles Myb-like domain profile. 411 475 IPR001005 -
Lal12g0087 611 Coils Coil 551 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0087 Lal-Chr12 592010 595471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0087 43 542 Trihelix Transcription Factor Family AT1G76880 47.665 8.20e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal12g0087 Myb_DNA-bind_4 2.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0087 - - gsj:114370603 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0087 12 592010 595471 Lal12g0087 12 592010 595471 ECH
Lal12g0087 12 592010 595471 Lal24g0073 24 456264 459306 LSH
Lal2g0982 2 6660245 6663784 Lal12g0087 12 592010 595471 PCT
Lal9g0869 9 6497164 6501127 Lal12g0087 12 592010 595471 PCT
Lal12g0087 12 592010 595471 Lal2g0982 2 6660245 6663784 PCT
Lal12g0087 12 592010 595471 Lal9g0869 9 6497164 6501127 PCT