Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0080 ATGGCAGATCTTGTTAGCTACAGGAATGTCGACCCTGACATCCACCAGGCATTGATTGCTTTGAAAAGGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAAACTAAGTTTTGTCTATTTAGACTTTCAAATGATGAGTCATCTTTAATCTGGATTTCCAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTCTCTAGAACTATTCCCGGACAAAGAACTGCTGTTTTCCAATGTTATCTGCGTCCCGAGAAGGACCATTTGTCTTTTTCACTTATTTATTACAACGGGAAGCGATCCCTTGACTTGATTTGCAAGGATAAAGTTGAGGCAGACGTGTGGATTGCTGGTCTCAAAGCACTAATATCATCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGCTTATATCTTGATGATAATAGAGATTTAACATTAAGTAGGACTAGTGATAGTTCAGCTAGTGCTTCACTAGATATCAGTCCTCCCAACGTTTCTGTGATTCTGCCAAATACTTCTCCAAAGCCCTTCCAGCCTAAGAATACCTTAAATTTTGAAAGGTTACATGCACCACCAAACCCATCAAATATGCAAGTGAAAGGATCAAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCTCCCAGCACGTCCAGTCATGGCTCTGCACCAGATGATTATGATGCCCTTGGGGATGTATACATTTGGGGGGAGGTTATCTGTGAGAACACTGTGAAAGTCGGTGCGGATAAAAGTGTCAGTTATGTCAGCCCGAGGGCAGATGTTCTCCTCCCTCGGCCACTGGAGTCCAATGTAGTTTTAGATGTACTTCAAATATCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCACGGTGTTGGGAAGAATGTGATTCAACCTCATCAAGTTGAAGCACTGGCTTCTTCAACTGTTGATTTTGTTGCCTGTGGTGAGTTCCATACCTGTGCTGTTACAATGGCCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGACACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGAGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCATACTGCTTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGGACATTTGGTGTCCTGGGCCACGGAGACAGGGAAAATGTTTCATATCCTCGAGAAGTTGAATCCTTATCTGGGTTGAGGACAATAGGTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGATGTTATTGTGACACAATCCAGCACGTCATCAGGTAAATTGTTTACTTGGGGAGATGGAGATAAAAATCGCCTTGGACAAGGAGACAAGGAGGCCCGACTGAAACCAACATGTGTTCCTTCACTTATCGATTACGATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTCAGCCTGACTACATCTGGACGTGTTTTTACAATGGGGAGCACCGTTTATGGTCAGCTTGGGAATCCTCAGTCCGACGGGAAGCTTCCGTGTTTGGTTGAAGACAAACTTTCTGGAGAGTCTGTTGAAGAAATTGCATGTGGAGCATATCATGTCGCCATTTTAACATCCAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGGGATGTTGAAGATCGGAAAACACCAACTTTGGTTGAAGCTTTGAAGGATAGACATGTGAAATACATTGCATGTGGTTCAAACTACTCTGCGGCTGTATGCCTTCATAAGTGGGTATCTAGTGCTGAACAGTCTCAGTGTTCTACTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTACAATTGTGGACTTGTGCACTGTCATTCTTGCAGTTCAAGGAAAGCTTTAAGAGCAGCCCTGGCTCCTAATCTGGGGAAGCTATATCGTGTTTGTGATTCTTGTTATGCAAAATTAATCAAGGTTGCAGACACTAGCAACAATAATCGGAGGAATGCTTTGCCTCGATTGTCGGGTGAAAACAAAGACAGGATTGATAAGTCTGAGCTAAGACTGTCGAAGTCACCAGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGGAAGAAGGCTGATACGTTCTCTCTGGTTCCGACCACACAAATAACTTCTTTGCTACAGTTGAAATATGTCTTCTCTACTACTAATGATCTGAAAAGAACACTCCCAAGACCTGTTCTTACATCATCAAGAGTGAGCTCCAGGTCGGTTTCCCCTTTCTCTAGAAAACCGAGCCCCCGTCGTTCAGCTACACCTATTCCAACAACAGAAGGACTTTCCTTCTCAAAAAGTGTTACTGATAGTTTGAAGAAAACAAATGAAATTTTGAACCAGGAAGTGCTGAAGTTACGTTCTGAGGTTGAGACCCTGAGGCAGAGGTGTGGACTGCAAGAATTAGAGATTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATCACATTGGCTGCTGAGGAATCTTCCAAGTCCAGAGCTGCAAAAGAAGTCATAAAGTCACTTGCAGCACAGCTCAAAAATATGGCTGAGAGGCTTCCTCCGGGTGTTTATAATGCCAAGAACATGAGACCAGCTCACCAACCAAATGATCAAGAGCCAAACACCTTCCATTATCCGGACACAAATAGGGAGTGTTTTGTGAGGGCAGAGTCAATCAGCGGCTCTAGCTTGGCTTCCATAGGACTTGAATCTTCTCTGATGAATAGAAAGAAGGGGAATTTACCAGGAAGCTATGGAACAAATCTCTACCAACAAAAACCGGGGCTGGTGACCTCTAACGAGAGAGATGATGACCCTGATGCTAAATTGCCAAATGGCAGTGGTATGATTCAGGCGAGAGGCAGTGGTGTGTCAGACACTACTATTGATGATAGGGATTCTGGGAATTTCCGAGATGATGAGAGCAGTTTGACATCAAGGAATTCTGATAGCAATCAAATTGACGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTCACTGCTCTGCATGATGGAACCCGTGATCTGAAGCGAGTGCGCTTTAGCCGAAGAAGATTTGGAGAGCATCAAGCAGAGATTTGGTGGTCAGAGAACCGTGACAAAGTATACGAAAGGTACAATGTTCGTATAACGGAAAAGTATTCCGGCCAAGCAGCACAGAATGCTAGTTCACCTGTTTCAAAATCATAG 3339 0.4382 MADLVSYRNVDPDIHQALIALKRGAQLLKYGRKGKTKFCLFRLSNDESSLIWISSSGERSLKLSSVSRTIPGQRTAVFQCYLRPEKDHLSFSLIYYNGKRSLDLICKDKVEADVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDNRDLTLSRTSDSSASASLDISPPNVSVILPNTSPKPFQPKNTLNFERLHAPPNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENTVKVGADKSVSYVSPRADVLLPRPLESNVVLDVLQISCGVKHAALVTRQGEIFTWGEESGGRLGHGVGKNVIQPHQVEALASSTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHDTDVSHWIPKRIAGPLERLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIGVACGVWHTAAVVDVIVTQSSTSSGKLFTWGDGDKNRLGQGDKEARLKPTCVPSLIDYDFHKIACGHSLTVSLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKLSGESVEEIACGAYHVAILTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAVCLHKWVSSAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNLGKLYRVCDSCYAKLIKVADTSNNNRRNALPRLSGENKDRIDKSELRLSKSPVPSNMDLIKQLDSKAAKQGKKADTFSLVPTTQITSLLQLKYVFSTTNDLKRTLPRPVLTSSRVSSRSVSPFSRKPSPRRSATPIPTTEGLSFSKSVTDSLKKTNEILNQEVLKLRSEVETLRQRCGLQELEIQRSAKKTQEAITLAAEESSKSRAAKEVIKSLAAQLKNMAERLPPGVYNAKNMRPAHQPNDQEPNTFHYPDTNRECFVRAESISGSSLASIGLESSLMNRKKGNLPGSYGTNLYQQKPGLVTSNERDDDPDAKLPNGSGMIQARGSGVSDTTIDDRDSGNFRDDESSLTSRNSDSNQIDAEWIEQYEPGVYITLTALHDGTRDLKRVRFSRRRFGEHQAEIWWSENRDKVYERYNVRITEKYSGQAAQNASSPVSKS 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 517 565 IPR000408 -
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 465 513 IPR000408 -
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Lal12g0080 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Lal12g0080 1112 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1089 IPR013591 -
Lal12g0080 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Lal12g0080 1112 Gene3D - 459 635 IPR009091 -
Lal12g0080 1112 SUPERFAMILY FYVE/PHD zinc finger 622 696 IPR011011 -
Lal12g0080 1112 SMART fyve_4 618 689 IPR000306 GO:0046872
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Lal12g0080 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 695 IPR013083 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Lal12g0080 1112 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Lal12g0080 1112 CDD PH_PLC_plant-like 12 124 - -
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Lal12g0080 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Lal12g0080 1112 CDD FYVE_like_SF 631 684 - -
Lal12g0080 1112 Coils Coil 877 897 - -
Lal12g0080 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Lal12g0080 1112 MobiDBLite consensus disorder prediction 1010 1024 - -
Lal12g0080 1112 MobiDBLite consensus disorder prediction 975 1029 - -
Lal12g0080 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1095 - -
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Lal12g0080 1112 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Lal12g0080 1112 SUPERFAMILY RCC1/BLIP-II 235 623 IPR009091 -
Lal12g0080 1112 Gene3D - 13 129 IPR011993 -
Lal12g0080 1112 SUPERFAMILY PH domain-like 14 123 - -
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Lal12g0080 1112 Pfam Transcription factor BRX N-terminal domain 872 907 IPR027988 -
Lal12g0080 1112 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Lal12g0080 1112 Pfam FYVE zinc finger 622 687 IPR000306 GO:0046872
Lal12g0080 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Lal12g0080 1112 ProSiteProfiles BRX domain profile. 1035 1090 IPR013591 -
Lal12g0080 1112 Coils Coil 821 848 - -
Lal12g0080 1112 MobiDBLite consensus disorder prediction 781 814 - -
Lal12g0080 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1095 - -
Lal12g0080 1112 Gene3D - 196 458 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0080 Lal-Chr12 520981 528691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0080 1036 1103 Major Intrinsic Protein MIP AT1G31880 51.471 1.40e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0080 - - gmx:100783270 1785.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0080 12 520981 528691 Lal13g0067 13 405904 418537 LSH
Lal12g0080 12 520981 528691 Lal24g0068 24 416580 423368 LSH
Lal2g0971 2 6535731 6543326 Lal12g0080 12 520981 528691 PCT
Lal12g0080 12 520981 528691 Lal2g0971 2 6535731 6543326 PCT