Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0079 ATGCATTGTTCTCACTCTTTATTCCTCTTATGGATCATCCATTTCTTCCTCTTAACATTTCCATCATCACCTTCACAAAACATCACACTTTTTGGTGAAGCTTTCTTCTCTGACAACAACTCCATTACCCTCACAAAACAACTACCTACTTGTCTCTCATCTTCATCTCCTGGTGTTGGAAGAGCTTTCTATGTCAACCCGGTTCGGTTTCTTGATCCTATAACTAACTCAACCGCTTCTTTTTCTTGCAAGTTCTCTTTCTCAATCATATCTTCCTCTTCTTCTTGCCCTTCTAGTGATGGCATTGCTTTCCTCATTTCCTCAACAACAGACTTCACAACCCTCTCTCAGGGTTATATTGGTCTTCCTTCACCACCACCCCTTTTTACCCAAGATTCTTCTTCTTACTTTGCTGTTGAATTTGACACAAGTGCTGACAATTCACTCGGTGATATCAATGATAACCACATTGGCATTGATGTTAACAGTGTTGTTTCTTTTGCTACAGTGGATGCTCTTTCACGTGGGATTGATCTCAAGAGTGGGAGAGCTATAACTGCGTGGATTGAGTATAGTGATGCATCCAAAATGGTGAGGGTTTGGGTTAGTTACTCTTATTCAACTAGGCCTCCAACTCCTATTCTTGCGTCAAATGTTGACCTTTCTCATAAGTTTAATGAGTTCATGCACGTTGGTTTCTCTGCCTCTAATGGGCAGGGTTCAAGTTTTCACATTGTTGATCATTGGCAGTTCAAAACTTTTGGTTATGACTCTCTTTCAGTGAGTCCTATGGATATGGTTGAAGAAGGGGATTGTTTGTTGTGTTATCCAGGGAATTCGTTCACAGAAACTCAGCACAATGATTCTCATTCTCATGGTCATAGAAAGAAGAAGACCGGAGAAATTGCTCTTGGATTAGGAGGTTTAGCAGCATTTTTGGTGTCAGCATTTGCAGTTGTGGTTGTAATTTGTGTTTTCTTGACAAAGAAGAAAGGTGTTGTTGGTGTTAGACAGATTAGGGAAGGGCAGAGTTGTAGATTTCAGACAAATAAAGTGCCTACAAGATTGTCACTTTCTGAGATAAGATCAGCTACAATGGGATTCAATAGGCATAGGCTTGTTGGTGAAGGTGCATCAGCAAAGGTTTATAAAGGGTCTCTTCCATTTGGAGATGTTGCTGTGAAAAGGTTTGAGAGGGATGATTTGAAAGACTCTACTTTGCACAATCCTTTTGCCACTGAGTTTGCTACAATGGTGGGTTGCTTGAGGCACAAGAATTTGGTTCAGCTTAAAGGGTGGTGCTGTGAAGGGAATGAGTTGGTGTTAGTTTATGAGTTCATGCCCAATGGAAGCCTCAGTGAAGTTCTCCATGGGAAGCATGATGATTCTTCATTTGCCCTTTCATGGAAGCAAAGAGTTAAAATAGTTCTAGGGGTTGCTTCTGCTCTTACTTATCTTCATGAAGAATGTGAGAGGCAAATCATTCATAGAGATGTGAAGACCTGCAATATAATGCTTGATGCAAATTTCAATTCCAAGCTTAGTGATTTTGGGCTTGCTGAAGTTTATGAACATAGCTCTTACAAAACAAGGGATGCTACTGTACCAGCAGGAACAATGGGGTATCTTGCTCCTGAATATGTTTATTCTGGTGTTCCAACTGTGAAGACTGATGTGTATAGCTTTGGTGTAGTGGTGTTAGAAGTTGCAACTGGGAGAAAACCTGTGGAAGATGATGGCACTGTGGTTGTTGACTATGTGTGGAAATTGTGGGAGAAGAAACAACTCACTGAAGGTGCTGACCCAAGATTGATGGGGAAATTTGATGTGTTAGAGATGGAAAGGATGCTATTGGTGGGGCTTCTTTGTGTACACCCTGACTATGAGAAGAGGCCAACAGTGAGAGGTGCAGCTAGAATTCTTAAGAAAGAAGCACCCCTTCCATTGTTGCCATCAAGTAAACCAAGGGTCAGAATTAGGCCTAATTGTCCAAATGATACACCTGAGACACAAACAGTTGTAGGGGATTGGGCCAGTACAGATGAGGGTCTCTATTTTACACCTAGGAGTGAGTTTTACTAG 2082 0.4131 MHCSHSLFLLWIIHFFLLTFPSSPSQNITLFGEAFFSDNNSITLTKQLPTCLSSSSPGVGRAFYVNPVRFLDPITNSTASFSCKFSFSIISSSSSCPSSDGIAFLISSTTDFTTLSQGYIGLPSPPPLFTQDSSSYFAVEFDTSADNSLGDINDNHIGIDVNSVVSFATVDALSRGIDLKSGRAITAWIEYSDASKMVRVWVSYSYSTRPPTPILASNVDLSHKFNEFMHVGFSASNGQGSSFHIVDHWQFKTFGYDSLSVSPMDMVEEGDCLLCYPGNSFTETQHNDSHSHGHRKKKTGEIALGLGGLAAFLVSAFAVVVVICVFLTKKKGVVGVRQIREGQSCRFQTNKVPTRLSLSEIRSATMGFNRHRLVGEGASAKVYKGSLPFGDVAVKRFERDDLKDSTLHNPFATEFATMVGCLRHKNLVQLKGWCCEGNELVLVYEFMPNGSLSEVLHGKHDDSSFALSWKQRVKIVLGVASALTYLHEECERQIIHRDVKTCNIMLDANFNSKLSDFGLAEVYEHSSYKTRDATVPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVLEVATGRKPVEDDGTVVVDYVWKLWEKKQLTEGADPRLMGKFDVLEMERMLLVGLLCVHPDYEKRPTVRGAARILKKEAPLPLLPSSKPRVRIRPNCPNDTPETQTVVGDWASTDEGLYFTPRSEFY 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0079 693 ProSitePatterns Protein kinases ATP-binding region signature. 374 395 IPR017441 GO:0005524
Lal12g0079 693 CDD STKc_IRAK 374 643 - -
Lal12g0079 693 SMART serkin_6 368 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0079 693 Pfam Legume lectin domain 16 253 IPR001220 GO:0030246
Lal12g0079 693 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0079 693 CDD lectin_legume_LecRK_Arcelin_ConA 16 255 IPR001220 GO:0030246
Lal12g0079 693 Gene3D Phosphorylase Kinase; domain 1 346 446 - -
Lal12g0079 693 Gene3D - 13 254 - -
Lal12g0079 693 ProSiteProfiles Protein kinase domain profile. 368 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal12g0079 693 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 253 IPR013320 -
Lal12g0079 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Lal12g0079 693 Gene3D Transferase(Phosphotransferase) domain 1 447 646 - -
Lal12g0079 693 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 23 659 - -
Lal12g0079 693 SUPERFAMILY Protein kinase-like (PK-like) 348 641 IPR011009 -
Lal12g0079 693 PANTHER - 23 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0079 Lal-Chr12 513718 515799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0079 2 692 Receptor kinase-like Gene Family AT5G42120 52.039 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lal12g0079 Pkinase 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0079 - - lang:109346768 1258.05