Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0064 ATGGCCGCCATAACCTTAAAGCCCTATTCTATTCTCCTTGCTTCAAACCCTCTTCTCCCTAAGCCATCATCCCCAACATTCTTGAGACCATGTCTCTCACAATTCACAATAATGCTTAAATCCCGAAGAAGAAAGATCAACACTTTGACCGTTTGTGTCCTCATGGATGATCCAAAACAAGATGAGGAAAAAGAAGAAGAAACTAAAGTGTTTGTTGTTTCAGAAAGAGTGGCAGAAAAATTGGGTAGGAAAAAATCAGAGAGGTTCACTTATCTAGTTGCTGCTATCATGTCTAGCTTTGGTATCACTTCCTTGTCTATCTTGGCTGTTTATTATCGATTCTCATGGCAATTGCAGGGTGGAGAAATTCCTTGGCCTGAAATGTTTGGTACATTTGCTTTCTCAATGGGTGCTGCTGTAGGTATGGAGTTTTGGGCAAGATGGGCTCATAAGGCTCTTTGGCATGCCTCCTTATGGCACATGCATGAGTCTCATCATCGACCAAGAGAAGGAGCATTCGAGCTTAATGATGTTTTTGCAATAATTAACGCTGTCCCTGCCATTGCTTTACTCTCATATGGTTTTTTCCACAAGGGTCTGGTTCCTGGCCTCTGTTTCGGTACAGGTCTTGGGATTACAGTGTTCGGGATGGCCTATATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTTAGAAGGGTTGCTGCTGCTCACCAACTCCACCATTCTGACAAATTCGACGGGGTACCCTATGGGCTGTTTTTGGGACCAAAGGAACTTGAAGAAGTGGAAGGTCTAGAAGAGCTAGAGAAAGAGATTAGTAGGAGAATAAAATCATATAATGTTTCATGA 885 0.4316 MAAITLKPYSILLASNPLLPKPSSPTFLRPCLSQFTIMLKSRRRKINTLTVCVLMDDPKQDEEKEEETKVFVVSERVAEKLGRKKSERFTYLVAAIMSSFGITSLSILAVYYRFSWQLQGGEIPWPEMFGTFAFSMGAAVGMEFWARWAHKALWHASLWHMHESHHRPREGAFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGTGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFDGVPYGLFLGPKELEEVEGLEELEKEISRRIKSYNVS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0064 294 Pfam Fatty acid hydroxylase 138 265 IPR006694 GO:0005506|GO:0008610|GO:0016491
Lal12g0064 294 PANTHER BETA-CAROTENE HYDROXYLASE 18 290 - -
Lal12g0064 294 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 18 290 IPR045019 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0064 Lal-Chr12 416888 418680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0064 3 207 Chloroplast and Mitochondria Gene Families AT4G25700 57.991 2.47e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0064 K15746 - gmx:100802778 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0064 12 416888 418680 Lal12g0064 12 416888 418680 ECH
Lal2g0941 2 6322306 6325153 Lal12g0064 12 416888 418680 PCT
Lal9g0824 9 5990582 5993077 Lal12g0064 12 416888 418680 PCT
Lal12g0064 12 416888 418680 Lal2g0941 2 6322306 6325153 PCT
Lal12g0064 12 416888 418680 Lal9g0824 9 5990582 5993077 PCT