Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0055 ATGGCAATTGCAAGACTCACTGCCTCTGGCACTCCCCATGTCATGGAAACAGAAGACATTAATGATTCTTTAGATAATGTAATAAGAAAAGACTCTCTCCTTTCTTTCCCCAGGGCTGGTGACAACCCTATACAATGGGTTCAATTACTGAATGCTTTAGATAACCCAGAACTTCCAGGTTGGCCTTTCTTCTCTCCTGTGAAGGTTCAGATGCAGAAGTGCGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATATACGTGCATATCACCGATCGAAAAAGCACGATAAGGACTCCAAAATAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTTTCTGTAGAAGAGGCAAGGGAAGTTGTATCATTCAGGAATGTGAAGCTGGAGGAAGTTCCAGGGTCTTCGATTTTAAATGCTCTCTCGACTCTTATTAAAAATCAAATATTTTCCCCCCTACCGCAGTATTACTATTATTTGAGGTCTGGTTCTGCCCTTCTGGATATTGTTGAATCTAGGTCTTCCAGTTTTCTCATATCTTCCCAAGATTTGTTCAGTATTCTTGACGATTCCAGTGAGAAAACATTTTTATGCGGGGCAGCAATGTCGATGCAAAGATATGTTTTTGATGGAGATGCTCGAAGGGTTTGTCTTGAGCCAAAAAACCTAGTTGCTTGTACAAGTTTCTTGCTAGAGCAGAAATTGGCGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCATTGAGGTGCCAGAATCTGCTGATGGAAGAAGAAGATGCTGCTCGGAGAAGACAAGCTCGGATTTTGGAGAAGAAACAAAAGAAAAAGCTTAAACAAAAAGAACAGAAGGCGAGGGAACAACTTGAAGCTGATACAGAAATTAAAGAGAATAACAGAAGCACAGTGGAGGCTGTATCGCCAGCAGAAGTATCTCTGGATACACATGAGTTTGAAGTACATAATCCAGATACAGTGGTGAGTCATGCTCCTTCACCACATGTAACTTTTCACTGCCCAGAGACTACTGAAGTTGTAGATGGGAATCCACAGTCGAAGAATGATTGTGATATGCACCAGAATATTGAGCAACAGAGGTCACAAGGACATAATCGTCAGCGCTTGATAGTTGCCAGACGGCATGGGCTGCCAAAATCTCAAAGGGCTGTAGCCAATGGTTCGTGTGCAAGCCAGAACTCTCAAACTTCAAAGCTTGAAGTTATTCAGAAATCTGGTACCCTCCATGAACAAAAGGCAGCTCCTATTATTAAAGGTAGTAAAGTATGGACTCGAAAGCCTAAACCAGAAATAGGTCGGGTGATATCAGAAGCCAGACTGCAGAAAGAACCAGAGCAAGGTAAAAACCATGAAATTTTGATAGGATCTATATCTGTTCCTCTTGGGAACTGCAGCCAATCAGAAGGTAATCTTGCGGCATCTCATGCGGATGGCATGGGAGTGAACCTTTCCAAGCATAATAGTGCTCAGGAGAAGCCAATGAAAACCGATTCCTCCCGGAGTGGCAACCCAGTTAAGCTTTGGAGGCCAGTTAGCCAGCATGGAACCAAAGATCAATTGCCACTCCGAAGTGGCGGGACTGAAGCTGATGCAGTTTATAGAAAAAATTATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGTTGAGTGATATAGATGGTAGTGATATTGGTTCTAGGAATAACATCTCCAATCTCGGGGCTAAAGTAGATCCAAGAAACTTCCGGTTATCCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAGGCTATCTCATCAAACCATGTGAAATTGGTTGTTTCACTTGATTCTGAACCTCCTGGATGCCAGGACGTGCAGGATTATGAATTAGGAACATGCCGATCTTCTGATGCTGACAGATGTAGTAGTCTTGCAAGTGCAGAGAACCCATTGCCTGCAACGGCTGGAGTTACTAAATCCATACCCAGAATGAAGCCTGGAAAGGGAAGCAAGATGAAGTACATTCCCAAAAAAAAAGCAGATACTCAGTAG 2049 0.429 MAIARLTASGTPHVMETEDINDSLDNVIRKDSLLSFPRAGDNPIQWVQLLNALDNPELPGWPFFSPVKVQMQKCDKCSREFCSPINYRRHIRAYHRSKKHDKDSKINRDLLGAYWDKLSVEEAREVVSFRNVKLEEVPGSSILNALSTLIKNQIFSPLPQYYYYLRSGSALLDIVESRSSSFLISSQDLFSILDDSSEKTFLCGAAMSMQRYVFDGDARRVCLEPKNLVACTSFLLEQKLAKAWLADKDAEALRCQNLLMEEEDAARRRQARILEKKQKKKLKQKEQKAREQLEADTEIKENNRSTVEAVSPAEVSLDTHEFEVHNPDTVVSHAPSPHVTFHCPETTEVVDGNPQSKNDCDMHQNIEQQRSQGHNRQRLIVARRHGLPKSQRAVANGSCASQNSQTSKLEVIQKSGTLHEQKAAPIIKGSKVWTRKPKPEIGRVISEARLQKEPEQGKNHEILIGSISVPLGNCSQSEGNLAASHADGMGVNLSKHNSAQEKPMKTDSSRSGNPVKLWRPVSQHGTKDQLPLRSGGTEADAVYRKNYQTLSGQSSLRLSDIDGSDIGSRNNISNLGAKVDPRNFRLSSHAAKAFLAQRWKEAISSNHVKLVVSLDSEPPGCQDVQDYELGTCRSSDADRCSSLASAENPLPATAGVTKSIPRMKPGKGSKMKYIPKKKADTQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0055 682 MobiDBLite consensus disorder prediction 276 311 - -
Lal12g0055 682 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 679 - -
Lal12g0055 682 Coils Coil 268 303 - -
Lal12g0055 682 MobiDBLite consensus disorder prediction 496 516 - -
Lal12g0055 682 ProSitePatterns Zinc finger C2H2 type domain signature. 74 95 IPR013087 -
Lal12g0055 682 MobiDBLite consensus disorder prediction 643 682 - -
Lal12g0055 682 MobiDBLite consensus disorder prediction 285 303 - -
Lal12g0055 682 MobiDBLite consensus disorder prediction 496 536 - -
Lal12g0055 682 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0055 Lal-Chr12 371205 378563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0055 18 678 C2H2 Transcription Factor Family AT4G25610 37.850 7.21e-123 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal12g0055 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0055 - - gmx:100799153 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0055 12 371205 378563 Lal12g0055 12 371205 378563 ECH
Lal12g0055 12 371205 378563 Lal13g0047 13 311230 318980 LSH
Lal2g0929 2 6245401 6252411 Lal12g0055 12 371205 378563 PCT
Lal9g0816 9 5901138 5908366 Lal12g0055 12 371205 378563 PCT
Lal12g0055 12 371205 378563 Lal2g0929 2 6245401 6252411 PCT
Lal12g0055 12 371205 378563 Lal9g0816 9 5901138 5908366 PCT