Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0047 ATGGGTAAAGCACCATGTTGTGAGAAACATGGAATGAGGAAGGGTGCTTGGACTCCTGAAGAAGACAAAACCTTAGCTGATTACATCAACAAACATGGCCATGGTAGTTGGCGTACACTCCCCAAACATGCAGGTCTCCTGCGTTGTGGAAAAAGTTGTCGGCTTCGGTGGATAAATTATCTTCGCCCTGACATCAAGCGTGGTCCATTTACTAATGAAGAAGAAACTACTATCATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCAGCTATTGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTATTGGAATACACATTTAAAGAAGCGACTCTTTGGGTCAGATCATTGTCTAGTAAGTGCAAAAAAACTGCATATATGTCCTGATCTAAAGATTGTCAAGTCTGAATCTCCTACTACAAGTCACATGGCTCAATGGGAAAGTGCTAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCTTCATTCCTTAATTCTTCCTCAACAACTAATCAAACATACAACGATTGCTATCTTCAACTTTGGCATTCTGAGGTTGGACACTCCTTTCGCACTATTAAGGGAAAGGAAGAAGGAGTAGTAGTGTGTCAAGGACATGTCTCTCAACAACCTTCATCACCATCATCATCATTAAAGATGAAACAGGTCAAGAACACTAGTACTTTTGCTAAAATGACTCAACAACAAGCATGTTGCTACAAACCAAAACTTGAAGATGATGATGACACAGGTGGTGAGATAGAGTCAGGAAATTGTGATTTTTTATATACTTGTGATTCTGCATTAAAGCACCTGTTAGATGTGCCTGATGATGATATAGGATTCTGGGACACACTTTCAGTTTCCAAGGTTCCCTTAATGGTAGATGACTAG 909 0.4081 MGKAPCCEKHGMRKGAWTPEEDKTLADYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPDIKRGPFTNEEETTIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLFGSDHCLVSAKKLHICPDLKIVKSESPTTSHMAQWESARVEAEARLSMESSFLNSSSTTNQTYNDCYLQLWHSEVGHSFRTIKGKEEGVVVCQGHVSQQPSSPSSSLKMKQVKNTSTFAKMTQQQACCYKPKLEDDDDTGGEIESGNCDFLYTCDSALKHLLDVPDDDIGFWDTLSVSKVPLMVDD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0047 302 CDD SANT 69 112 IPR001005 -
Lal12g0047 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal12g0047 302 CDD SANT 16 61 IPR001005 -
Lal12g0047 302 Gene3D - 69 116 - -
Lal12g0047 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal12g0047 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 290 - -
Lal12g0047 302 SMART sant 66 114 IPR001005 -
Lal12g0047 302 SMART sant 13 63 IPR001005 -
Lal12g0047 302 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 290 - -
Lal12g0047 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal12g0047 302 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal12g0047 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal12g0047 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal12g0047 302 Gene3D - 14 66 - -
Lal12g0047 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0047 Lal-Chr12 327927 329620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0047 1 287 MYB Transcription Factor Family AT3G61250 50.847 1.79e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0047 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0047 K09422 - gmx:100782075 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0047 12 327927 329620 Lal13g0035 13 244955 246101 ECH
Lal12g0047 12 327927 329620 Lal12g0047 12 327927 329620 ECH
Lal12g0047 12 327927 329620 Lal13g0035 13 244955 246101 LSH