Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0046 ATGGGGTGGCAGGCACTAGAAAAGGGAAAACCAAAACACAGGAAGGGATTATGGTCACCTGAAGAAGACAATAGGCTTAGAAACTACATCCTTAAGCATGGTCATGGTTGCTGGAGCTCTGTCCCTATTAAGTCAGGGTTGCAAAGGAATGGAAAGAGCTGCAGACTAAGATGGATTAACTATTTAAGGCCAGGATTAAAGAAAGGTGTGTTCAGCAAACAGGAGGAGGAGACTATCCTCACCCTTCACAACATGTTAGGAAACAAGTGGTCTCAGATTGCAAAGCATTTGTCAGGAAGGACTGACAATGAGATAAAAAACTATTGGCATTCATATATGAAAAAGAGAATGGCCAAAGCTAAGGAAATGGAATGTCATAAGGAAATTCAGTATGCCACCTCAAGCTCAGATACCTTGAACTCATCACCCCCTCTTCAAAAACTTGCAACACAAGGCACACATAATATAAACTTCACCAAAGAGGCAACAAATGAAAGCTCCTTACCAAAACTGTTATTTGCTGAATGGCTTTCAGTTGATCATGTAAATGGTGGAAGCTCTTCTGATTCATATAACTCTTTAGCCTTGAGGAACGGGTTTGATCAAAATCCAACTTTACAAGAAGCTTCAATGCAGCATTATATGTTAGAAGGACCCTTTGATGGAGGAGAGTATCATAATAATAGTATAACTCACATTTCAGAAACTGAGATGTTCAATTCACACCTTAAATTTGGAAATCAAATGGTGACAAATGGATTCATTCATTGTATATCTGGGAATGATTTAAGTAGCAATTTCAGCCTAAACAATGATGCAATGTACTCATGA 831 0.3875 MGWQALEKGKPKHRKGLWSPEEDNRLRNYILKHGHGCWSSVPIKSGLQRNGKSCRLRWINYLRPGLKKGVFSKQEEETILTLHNMLGNKWSQIAKHLSGRTDNEIKNYWHSYMKKRMAKAKEMECHKEIQYATSSSDTLNSSPPLQKLATQGTHNINFTKEATNESSLPKLLFAEWLSVDHVNGGSSSDSYNSLALRNGFDQNPTLQEASMQHYMLEGPFDGGEYHNNSITHISETEMFNSHLKFGNQMVTNGFIHCISGNDLSSNFSLNNDAMYS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0046 276 SMART sant 14 64 IPR001005 -
Lal12g0046 276 SMART sant 67 115 IPR001005 -
Lal12g0046 276 CDD SANT 18 62 IPR001005 -
Lal12g0046 276 CDD SANT 71 113 IPR001005 -
Lal12g0046 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Lal12g0046 276 PANTHER MYB DOMAIN PROTEIN 55 154 270 - -
Lal12g0046 276 PANTHER MYB DOMAIN PROTEIN 55 1 152 - -
Lal12g0046 276 Gene3D - 15 67 - -
Lal12g0046 276 Gene3D - 69 139 - -
Lal12g0046 276 PANTHER MYB TRANSCRIPTION FACTOR 1 152 - -
Lal12g0046 276 PANTHER MYB TRANSCRIPTION FACTOR 154 270 - -
Lal12g0046 276 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lal12g0046 276 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lal12g0046 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lal12g0046 276 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lal12g0046 276 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal12g0046 276 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0046 Lal-Chr12 322712 325575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0046 8 181 MYB Transcription Factor Family AT3G48920 57.386 1.31e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal12g0046 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0046 K09422 - gmx:778167 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0046 12 322712 325575 Lal12g0046 12 322712 325575 ECH
Lal12g0046 12 322712 325575 Lal13g0034 13 239748 243280 LSH
Lal12g0046 12 322712 325575 Lal24g0039 24 274463 278235 LSH