Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0035 ATGGACTCCACCATGATGATGAAATCAACTACCTTCCCAATTTTCACGTCCAACCCATTTCTCATCTCAACAAAATCTCTCACTCTCAGACCCTCAACGGTTTCCATAAAACCTCCACCTCCATGTTTTGATTACAGACAAGAAATATCAGAGGAGTCAAAAGCAGCCATTGCTGAATCACACCCAGAGTTGCTTGACTTGGCTGAGACTGGAAGGTTGGTTTTGGTTCAGAAGAAGAAGTTTGGGCCAGTACCTTCATGGAGAACAGAGTTTGTCGAACCAGAGACAATATGGTTGGTCGGAACTAGCCATGTTTCTAAGGACTCGGCTGTGGAGGTACAGCGCGTGATACGCACTCTCAGGCCAGATAATGTTGTTGTTGAGCTTTGTAGAAGCAGGCAAGTTTTTTGTTGTTCTTTTCAAACCTTGCTTACACACACGATAAAAGCTGGGATCATGTATGCGTCTGCTGATGAAGAGAGTGGCAAACAATTAAGATCTAATATGTTTTCATTAAGTGGCGCTGGATTTTTTGGAGCTGTTGGTCGCAGCTTAAACTTGGGTGGTCAAACTGCTTTAGCATTAAGATTACTTCTGGCTGCTTTTTCATCAAAGATCTCTTCAGATATTAACCGCCCTTTTGGTGATGAGTTTCGTGCTGCTCGAAAAGCATCTGAGGAAGTTGGTTCACAGATCGTTTTGGGGGATCGGCCAATTGAAATAACACTTCAGAGAGCATGGAAGGCTTTGAAATGGACTGACAAACTGAATTTGGTTATCTCAGTTATTCGCGGGATAACATCTTCATCTCATATTTCTATAAATAAGCTCGAGGAAGCAAGTTCGGATGATGATACATTGCAGCTTTATGAGCAACTAAGTTTTTCATACCCGTCATTATTGCCACCTCTCATACATGAACGAGATACTTATCTTGCATGGTCACTGAAGAGGAGCAAAGCTGTGAATAAGTGTAAAAGTGTGGTTGGTGTCATTGGAAAAGGGCACATGAATGGTGTAATATATGCACTGCTATCTGATACAGGGAATTTGAGGTTTCGTGACCTTGTAGCAAACTCCACTTGGAGCACAAGCGCAGATAGTTTATATTTTGAAGCACAACGTGGTGTTCAAGACCCTATTTATGGTTGTTTTGGAATTATGACTCGGCTTATTCAACAAATCCATAACATAGAAACTGAGAAAAACCCTAGATCTGTGATCTGCTGCCGTTTGAATCAAGGGAAAATGAGGCCTATCTTCTGTGGGAATTTAGAACATGATGCACGGTCATCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGAAAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTACATGGAAGATGATAGAGATGCTGAGGCTGCACTTCGTGCTCTTGATCGGACAGAATTTGGCCGGAAGGGGCGCAGACTTCGTGTTGAATGGACAAAGCAAGAACGTGGTGTTAGAAGGCCTGCTCCGAGCTCAAGATCATCAGGGAATGGGAGGCCCTCAAAGACCTTATTTGTGATTAATTTTGATGCATACCATACCAGAACACGGGACTTGGAGAGGCACTTTGAGCCGTATGGTAAGATAGTCAGTGTGAGAATCAGAAGAAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGGGCATTGGAAGCTACAAATATGAGCAAATTGCTGGATAGAGTTATTTCAGTTGAATTTTCTGTTAAAGATGATGATAGGCGGAATGGATACAGCCCTGAGAGAGGCCACGGTCGACAAGGCTATAGAAGCCATGATGGAAGGCGATCACCCAGTCCTTATCTTAGAGAAAGAGGTAGTCCTAATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGCCATGGCCGTAGCCGAAGCCCCCTTCAAAGAGACCGTGTGAGCCCTGCTTATGTGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGGTGGCTCTGACCCTGTTCGTGGCTTCAGCCACAGTCCTTATCACAAGGAGCAGGTAAGACCTAGTGACCGTGGCATCTCTCCTTCCCATAATAATAGTCATGATGGCAGAGAGAAAACAAGTCCTCAAAATGGTCGTGGTTCTAGCCGTAGTCCTTATGATATGGACAAGGTGGCTAGCCCTGAAAATCGCCATGGCTCCAGGCATAGTCCTGAAGAAGAAGGGGCCATCAGCAGCCCTTACAATGGTTATGGAGGGAGCCCAACTGCTATGCCTGAAAGTCCTGGGCATGAACGATACCACAGCCAGTCCCCCCCTGCAGAAGAATGA 2334 0.4494 MDSTMMMKSTTFPIFTSNPFLISTKSLTLRPSTVSIKPPPPCFDYRQEISEESKAAIAESHPELLDLAETGRLVLVQKKKFGPVPSWRTEFVEPETIWLVGTSHVSKDSAVEVQRVIRTLRPDNVVVELCRSRQVFCCSFQTLLTHTIKAGIMYASADEESGKQLRSNMFSLSGAGFFGAVGRSLNLGGQTALALRLLLAAFSSKISSDINRPFGDEFRAARKASEEVGSQIVLGDRPIEITLQRAWKALKWTDKLNLVISVIRGITSSSHISINKLEEASSDDDTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNKCKSVVGVIGKGHMNGVIYALLSDTGNLRFRDLVANSTWSTSADSLYFEAQRGVQDPIYGCFGIMTRLIQQIHNIETEKNPRSVICCRLNQGKMRPIFCGNLEHDARSSELERLFRRYGKVERVDMKSGFAFIYMEDDRDAEAALRALDRTEFGRKGRRLRVEWTKQERGVRRPAPSSRSSGNGRPSKTLFVINFDAYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFSVKDDDRRNGYSPERGHGRQGYRSHDGRRSPSPYLRERGSPNYGRGPSPYKRERSSPDYGHGRSRSPLQRDRVSPAYVRRSPSPYRRERGGSDPVRGFSHSPYHKEQVRPSDRGISPSHNNSHDGREKTSPQNGRGSSRSPYDMDKVASPENRHGSRHSPEEEGAISSPYNGYGGSPTAMPESPGHERYHSQSPPAEE 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0035 777 CDD RRM1_AtRSp31_like 418 489 - -
Lal12g0035 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 575 IPR000504 GO:0003723
Lal12g0035 777 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 420 478 IPR000504 GO:0003723
Lal12g0035 777 MobiDBLite consensus disorder prediction 725 740 - -
Lal12g0035 777 SMART rrm1_1 512 578 IPR000504 GO:0003723
Lal12g0035 777 SMART rrm1_1 419 486 IPR000504 GO:0003723
Lal12g0035 777 SUPERFAMILY RNA-binding domain, RBD 417 508 IPR035979 GO:0003676
Lal12g0035 777 MobiDBLite consensus disorder prediction 630 647 - -
Lal12g0035 777 MobiDBLite consensus disorder prediction 584 612 - -
Lal12g0035 777 MobiDBLite consensus disorder prediction 584 777 - -
Lal12g0035 777 CDD RRM2_AtRSp31_like 512 581 - -
Lal12g0035 777 Gene3D - 413 500 IPR012677 -
Lal12g0035 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 418 490 IPR000504 GO:0003723
Lal12g0035 777 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 582 IPR000504 GO:0003723
Lal12g0035 777 MobiDBLite consensus disorder prediction 488 509 - -
Lal12g0035 777 Gene3D - 501 611 IPR012677 -
Lal12g0035 777 SUPERFAMILY RNA-binding domain, RBD 495 590 IPR035979 GO:0003676
Lal12g0035 777 PANTHER PHEROMONE SHUTDOWN PROTEIN 32 385 IPR046345 -
Lal12g0035 777 MobiDBLite consensus disorder prediction 661 691 - -
Lal12g0035 777 CDD TraB_PrgY-like 97 344 IPR046345 -
Lal12g0035 777 PANTHER TRAB DOMAIN-CONTAINING PROTEIN 32 385 - -
Lal12g0035 777 Pfam TraB/PrgY/gumN family 87 340 IPR002816 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0035 Lal-Chr12 258006 266149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0035 416 693 Eukaryotic Initiation Factors Gene Family AT2G23350 25.962 8.46e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal12g0035 TraB 9e-23 CL0572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0035 - K12893 gmx:100796509 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0035 12 258006 266149 Lal12g0035 12 258006 266149 ECH