Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0034 ATGTTTCCATTCAATCATTTCGGTTTTCTTGACCAACATCCAAGTAACCCCGATGCTTCGTCCTCTTCGCCGCTTTCGGAGGGTGGCAGTGATTTTCATGCGGCGGCGATCTCCAGCGACGAGGTGTTATTGGCGTCGAACCACCCGAAGAAGCGTTCTGGAAGGAAGAAGTTCAAGGAGACGCGCCACCCGGTGTACCGGGGCATTCGGCGGAGGAACGCTGGCAAGTGGGTATGTGAGGTGCGCGAGCCTAATAAGAAGAGCAGGATTTGGCTTGGGACATTCCCCACCGCGGATATGGCAGCGCGTGCACACGACGTGGCTGCTATTGCTCTAAGGGGAAAGTCCGCGTGCCTTAACTTTGCGGATTCCGCGTGGAGACTTCCGGTGCCGGCTTCGTCGGAGGCAAGTGATATCCAGAAGGCAGCAGCGGAAGCGGCGGAGGCGTTTCGGCCGGGAACGGAGTTGACAATGGAGGAAGGAAATTTGGTTAATGAGTCAGAGGTAACAGCAGTGGATACGATGGTGGAGACGCAAGAGGGAGAGTCGTCATCGGTGCCGGAGTGGCTGAGGGACATGGTGTTCATGTCGCCAACACATTACGACTACAATACGGGAAGTGAGTACTATACTGATGACGTGGACTTTGATGATGTTGAAATCTCTTTGTGGAATTATTCTATTTAA 687 0.5371 MFPFNHFGFLDQHPSNPDASSSSPLSEGGSDFHAAAISSDEVLLASNHPKKRSGRKKFKETRHPVYRGIRRRNAGKWVCEVREPNKKSRIWLGTFPTADMAARAHDVAAIALRGKSACLNFADSAWRLPVPASSEASDIQKAAAEAAEAFRPGTELTMEEGNLVNESEVTAVDTMVETQEGESSSVPEWLRDMVFMSPTHYDYNTGSEYYTDDVDFDDVEISLWNYSI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0034 228 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 228 IPR045277 GO:0003700
Lal12g0034 228 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Lal12g0034 228 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Lal12g0034 228 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Lal12g0034 228 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Lal12g0034 228 MobiDBLite consensus disorder prediction 43 64 - -
Lal12g0034 228 MobiDBLite consensus disorder prediction 49 64 - -
Lal12g0034 228 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 228 - -
Lal12g0034 228 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Lal12g0034 228 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Lal12g0034 228 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Lal12g0034 228 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0034 Lal-Chr12 255801 256487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0034 29 226 AP2-EREBP Transcription Factor Family AT4G25470 51.643 1.70e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal12g0034 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0034 - K09286 aprc:113872706 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0034 12 255801 256487 Lal12g0034 12 255801 256487 ECH
Lal12g0034 12 255801 256487 Lal24g0031 24 216318 216992 LSH