Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0026 ATGGGAAGAGGGAGAGTTATTGTGGAGAGAATAGAGAACAAGATGAGTCGTCAGGTAACATTCTCAAAGAGAAGGAGTGGTTTGTTGAAGAAAGCGTTTGAGTTATCTGTTCTATGCGATGCTGAAATTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTTTTCCAGTTCACCACTTGTCATGACATAAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACATGTCACAGACTGGAGACTCAGTTGAACATCAATCATCACAAAAACTATACGAGGAGCTTTTGAAATTAAGAGCCAAGCATGAATCGCTTGAGAAGACACAAAGGAATTTTGAAGGAGAAGATCTAGGGCCACTTAGCATGAATGAATTGCAGAGTCTTGAGAAACAAATTGACAGAACGCTCTCACAAGCACGACAACACCATATGAAAAAGCTTATTGCACGAATTGATGAGTTACGCCAACAGGTTCAGAATCTGGAGGGGGTTAACAAACAATTGGAAGCCAAGTTGAGGAAATTATGTCGCCATAACCTATCATTTATACACATTTTCAAACATTTGTGCCAGGAGACGGATAAAGTCATTATTTGGTTTGGGTATGATCAGCAGCAAGCTGGTTCAAAAGTAAGCAAGAGTGACAGAAGGAGCGAGCTAGGCCAATAA 672 0.4018 MGRGRVIVERIENKMSRQVTFSKRRSGLLKKAFELSVLCDAEIALIIFSNRGKLFQFTTCHDINKIIEKYRQCCFNMSQTGDSVEHQSSQKLYEELLKLRAKHESLEKTQRNFEGEDLGPLSMNELQSLEKQIDRTLSQARQHHMKKLIARIDELRQQVQNLEGVNKQLEAKLRKLCRHNLSFIHIFKHLCQETDKVIIWFGYDQQQAGSKVSKSDRRSELGQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0026 223 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Lal12g0026 223 PANTHER MADS BOX PROTEIN 1 208 - -
Lal12g0026 223 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal12g0026 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 208 - -
Lal12g0026 223 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lal12g0026 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 Coils Coil 126 179 - -
Lal12g0026 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal12g0026 223 Coils Coil 89 116 - -
Lal12g0026 223 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lal12g0026 223 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0026 Lal-Chr12 218796 221537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0026 1 173 MADS-box Gene Family AT2G45650 50.289 3.18e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal12g0026 K-box 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0026 K09264 - gmx:100778860 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0026 12 218796 221537 Lal12g0026 12 218796 221537 ECH