Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0012 ATGTTCTCTTCATCCACATATCATGACTCCTTCACTAACCCTTACCTTACCACTTTTCCTTCTTCTCATTACCCTAATAATAATGCTAATACCTTTCCTTGTTTCATTGACCCTACTCCTCCTCCTCCTCCTCCTCCTCATGAGTTTAATGATTTTGAATCTAACACCTTTCTTCATGATCCACTTGTTAATGTTGTTCCATTCATATCCTCATCCACCACTACTAATCAAACTCAAACCCATCATCTTCATCATCATAATATGTCAATGCTTGATAATAATCAGTTACAAGATGGTATATCCCCCTATGGTGTTACTCTACACCATGGTGGTAGCATTAATCCCAATTTTATGATTCAGAAACCAGCTGCTGCTGCTGCAGCTGCCATAGCAAAGAAAGATAGGCACAGCAAGATTCACACATCACAGGGTTTGAGGGACAGGAGGGTTAGGCTTTCAAGTGAAATAGCAAGAAAGTTCTTTGATCTTCAGGACATGCTTGAGTTTGACAAACCTAGCAATACCCTTGAGTGGCTTTTCACAAAGTCAGAGAACGCTATCAAAGAACTAGCTAGAAGTAAGAATAGTAGCAGCTGCAGTCAGAAGCAGCCACATAACAACAACACATCAAATGAGAAAGTACCATTATTGAGTGGTGATGCTTCTAAAGTGAGGGTGAAGTTGAAATGTGGACAGAGGGATCAAGATGTTTGTAGTGTTCAGACTAAAAAGGAATCAAGGGAAAAGGCAAGAGCAAGAGCAAGAGAAAGGACTTGTCTCAACAAGATGTGCAACAACACCAGTGGGAGATTACTAGAAGAAAGGTCATCATGCCCAGCAACTTCATCAAACACTTCTCAATATGAACCTAATTGTGCAAGATGGACACATCATCATCAGATTCTTCAACCTAATTACCCTTCTTACACTCATCACCAACTTGGTATAACTGAAGCACCTCTTAGAGATGCCTTTGATGTGATTGAGGAATCATCCATTATGATAAAAAGGAACAACATGAAGTCATCTTTGATGCCTTCTTATAACCAACAAAACTTCGTGAACTCTAAGGAACCAAGTTTCAACAACAACGATGATGATGACTACCATTCATTCCCATATACTACTCAAAATTGGGATACTAATAATGAGAACTCCAACTTTTGTGGAATAGCCACAATGAATCTATCTACATTTTTCATGAACCAGTGGTAA 1215 0.3909 MFSSSTYHDSFTNPYLTTFPSSHYPNNNANTFPCFIDPTPPPPPPPHEFNDFESNTFLHDPLVNVVPFISSSTTTNQTQTHHLHHHNMSMLDNNQLQDGISPYGVTLHHGGSINPNFMIQKPAAAAAAAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKNSSSCSQKQPHNNNTSNEKVPLLSGDASKVRVKLKCGQRDQDVCSVQTKKESREKARARARERTCLNKMCNNTSGRLLEERSSCPATSSNTSQYEPNCARWTHHHQILQPNYPSYTHHQLGITEAPLRDAFDVIEESSIMIKRNNMKSSLMPSYNQQNFVNSKEPSFNNNDDDDYHSFPYTTQNWDTNNENSNFCGIATMNLSTFFMNQW 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0012 404 MobiDBLite consensus disorder prediction 191 217 - -
Lal12g0012 404 ProSiteProfiles R domain profile. 244 270 IPR017888 -
Lal12g0012 404 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 42 398 - -
Lal12g0012 404 Pfam TCP family transcription factor 131 262 IPR017887 -
Lal12g0012 404 ProSiteProfiles TCP domain profile. 132 190 IPR017887 -
Lal12g0012 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 398 IPR005333 GO:0003700
Lal12g0012 404 MobiDBLite consensus disorder prediction 191 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0012 Lal-Chr12 92248 93462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0012 130 258 TCP Transcription Factor Family AT1G67260 42.857 2.74e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal12g0012 TCP 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0012 - - lang:109346833 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0012 12 92248 93462 Lal24g0017 24 115047 117338 LSH
Lal12g0012 12 92248 93462 Lal9g0768 9 5384301 5387224 PCT