Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1608 ATGGCTGCTACTGTTGCTCTCAGAAAGTCTTGTAGAAGACTCCTTCCTTTCTACTCCACTCATATCTATTCTTGTTCTTGCTCCCACCCACCACCCTCACCCCTTCTCTCTTCAAATGGCTCTTCTTCCAAACCCAATCCTCTGTGGAGGAGATCCATGGCCACTTTCACCAGAACAAAACCCCATGTTAATGTTGGAACTATTGGACATGTTGATCACGGCAAGACTACACTCACTGCTGCTATCACCAGGGTTCTGGCAGATGAAGGTAAAGCTAAGGCTGTTGCATTTGATGAAATTGATAAGGCTCCTGAAGAGAGGAAGAGAGGAATCACTATTGCAACTGCGCATGTTGAGTATGAGACCGCAAAACGACACTATGCACATGTCGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCTGCACCTGATGGTCCAATGCCTCAAACAAAGGAGCACATTCTTCTAGCTCGTCAAGTTGGTGTGCCATCTCTTGTGTGTTTTTTGAATAAAGTTGATGCTGTTGATGATCCGGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGTTTCTACAAGTTTCCGGGGGATGAAATCCCAATCATTAGAGGTTCAGCATTGTCCGCTTTACAGGGCACAAATGAAGAGATTGGAAGAAAGGCCATCCTAAAACTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTTCGCCAGCTTGACAAACCATTCCTAATGCCAATTGAAGATGTTTTCTCAATTCAGGGACGAGGAACGGTAGCAACGGGCCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTCCTCTAAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTAGATCAAGGACAAGCTGGTGACAATGTTGGTCTCCTTCTCCGTGGCCTTAAGCGTGAAGACATTCAACGCGGACAGGTCATTGCCAAGCCTGGTTCTGTGAAAACATCGAAGAAATTTGAAGCAGAGATATATGTACTCACGAAGGATGAGGGAGGGCGCCACACTGCTTTCTTCTCTAATTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAATTGCCTGAAAATGTTAAGATGGTTATGCCTGGAGATAACGTTACTGCAGTATTTGAATTGATTTTACCTGTTCCACTTGAAGCAGGTCAGACAAAGATTTGCCTTGAGAGAAGGAGGAAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAGTTATAAGGGCGCTATGTCATTCAAGTTTTAAGTCTACTTGA 1389 0.4392 MAATVALRKSCRRLLPFYSTHIYSCSCSHPPPSPLLSSNGSSSKPNPLWRRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEERKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLEAGQTKICLERRRKNSWCRCGVKSTELVIRALCHSSFKST 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1608 462 Hamap Elongation factor Tu [tuf]. 51 447 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal11g1608 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 352 427 IPR009001 -
Lal11g1608 462 TIGRFAM EF-Tu: translation elongation factor Tu 52 427 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lal11g1608 462 SUPERFAMILY Translation proteins 255 352 IPR009000 -
Lal11g1608 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 101 116 IPR031157 -
Lal11g1608 462 CDD EFTU_III 353 426 - -
Lal11g1608 462 Pfam Elongation factor Tu GTP binding domain 60 253 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 Gene3D Translation factors 391 429 - -
Lal11g1608 462 TIGRFAM small_GTP: small GTP-binding protein domain 63 199 IPR005225 GO:0005525
Lal11g1608 462 Pfam Elongation factor Tu C-terminal domain 351 426 IPR004160 -
Lal11g1608 462 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 PRINTS GTP-binding elongation factor signature 108 116 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 PRINTS GTP-binding elongation factor signature 128 138 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 PRINTS GTP-binding elongation factor signature 144 155 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 PRINTS GTP-binding elongation factor signature 181 190 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 PANTHER ELONGATION FACTOR TU-RELATED 23 429 - -
Lal11g1608 462 Gene3D Translation factors 258 387 - -
Lal11g1608 462 Gene3D - 52 255 IPR027417 -
Lal11g1608 462 Pfam Elongation factor Tu domain 2 277 346 IPR004161 GO:0005525
Lal11g1608 462 PANTHER ELONGATION FACTOR TU 23 429 - -
Lal11g1608 462 CDD EFTU_II 263 350 IPR033720 -
Lal11g1608 462 CDD EF_Tu 61 255 IPR041709 -
Lal11g1608 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 256 IPR000795 GO:0003924|GO:0005525
Lal11g1608 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1608 Lal-Chr11 19026795 19032210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1608 58 366 Eukaryotic Initiation Factors Gene Family AT5G60390 33.626 4.58e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1608 K02358 - gmx:100776891 718.383