Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1591 ATGTCTCCTCCACATACTATAATTCTTTCACTTTTCATCATTTTCATCTCATTTGATTTGTCCTTTGGCTTTTACATAGAGGACAAACATTATCAAACAAATTATCAACATTACACTACTACTGCACCTACAAGGTTGATGAGAATGACCCATATGTCTCAACAAATGGTTAATGTTGATAACTATGGAGCAATTGCTAATGATGGAAGAGATGATACTGAGGCCTTTGAGAAGGCATGGAATGAAGCATGTTCTATAGGGGCAATTCTTGTGGTACCTGAAAAGAGAGTCTATCATCTTAAGCCTATAACATTTTCAGGTCCATGCCAACCCAATACTGCCTTTAAGGTATATGGAACAATCAAAGCATGGCCTCATATGTCAGCATATGAGAAAGATAGACGGATATGGATTATGTTTGATAGTATCATGAATCTCGTAGTTGATGGTGGTGGTATCATCAATGGTAATGGTAGAAAATGGTGGCAGAACTCTTGCAAAGTTAACAAAAGCCTTCCATGCAAAGAAGCACCAACTGCTGTGACTTTCTATCAATGTAACAACTTGCAAGTGAAAAATCTCAAGTTCAAAAATGCACAGCAAATGCATGTTAGGTTCCAGAAATGCTTCAATGTTAGAGCTTCAAATTTGTTGGTCAAAGCACCAGGGAACAGTCCTAACACTGATGGAATTCACATCACTGGAACACAAAATATGATCATAAGCAACAGTATCATTGGTACAGGTGATGACTGTATTTCAATAGTTAGTGGGTCCAAAAACATTCGTGCCATTGGTATCACTTGTGGACCAGGACATGGAATAAGCATTGGAAGCTTAGGAGCTGATAACTCAAAAGCTGAAGTCTCGAATGTGATAGTGAACAGAGCCACCTTAACCGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGGGGTTATGGGTATGCAACAAATATCAAATTTATGAACATGGCAATGCGAAATGTGACTAATCCCATAATCATAGATCAAAACTACTGTGATCAGAAAGAACCATGCCAAGAGAAGGAGTCAGCAGTAGCATTGAGTAATGTTGTGTACCAAAACATTAGAGGAACTAGTGCCTCAGAAGTGGCAATCAAATTTGAATGTAGCAAAACAGTCCCATGCAGAGGAATCTACATGCAAAATGTGATTTTAACACCTGAAGATGGTGATGGTATCAGTGCTACATGGTTGCCAGAGGGTTCCTCTGATTGTGGTGAAAAGCTAGCTAGCCTCATTTTTGAAGTGTTTATAAACTTTGCAGTATTTCTTACTATGGTCATTTTGTGCAATGGTTTACATTTCATACTAAAGCCTTATTCACAACCTCGCATTACTTCTGACATAATTGCAGGACTAGCCTTAGGCAACATTGGACATGTACGTACCCTATTTGATAGTTTCAACAAGGCCTTTGGATTCATCATTGATTTTGGTATGATGTGTTACATGTTTGCATTGGGCATAGAAATGGATTCTCATGTACTCTTCAACCACCTACCTAGACAAACTAAAGCCGCTTATGGAGGACAAATCTTCACTTTCGTCTTAACCGCTTTGGCAACCCCTTTCTTGGCTTACTTTGATGAAAATAAAATACTAGAATTCACCCTCTGTCTTGCCCTTGCTGTTTCAAGCACCGCCTCCCCTGTCCTCACCCGTTTAATAACTCATCTCAAAATAGGCAAGTCAGATATCGGGAAGATCGTCATCGCTGGAGGGATGCACTCAGATTTTATAGCATCTTTGTTCCTTTCAATTGGTTACATATTTGTTCCAATGGCATTGTTCTGTGGTGATTTTCAAGCAACACAAGGTCTTAACAAGGCCTTTACAATGGCAGGTGCAGTTCTGGGTCAGACAGTGTTTGCAGCCAGTTTTGGACCATTTTTCATGAATTGGATTAACAATGAAAACCCTGAAGGTAGACCAATGAAAGGTGTTTGTTTGCCCCGGGAGGGTAGAGTTTCCAAATGGGTTATTACCAAAATCAATTATATGTTGACCACCATATTTTTCCCCATATTTTTCTTGTGGATGGGGTATGAAGCTGATTTCAACAAGTTTCATTTTCGAAGTCGCGGAGCATGGGCAAAATTCTTTACACTTATTATAGTAGGGACTGCAGGTAAGATTGCTGGAACAGTTATTTCTGGGACAATGCTGGGATTTCACTGGCCTGAATCAGTTGCAATAGGGTTGCTCCTCATCACCAAGGGTCACTTACATATCTACTTGGCTGTCAAATCAATGAATTGTGGTGCAAATACCTCCACAGGCATTGGGATGATAATTGCAATATTTTTCACAGTTGTGCAAGGGCCAACAGTTGTGGCAAATATCATCAAACGGGCGAGGAAAAGGGCACCTAGTCATCACATGGCCCTTCAATTGCTTGACCCAACAAGTGAGCTAAGGATCCTCCTATGCCTTCATGGACTTCATAATATTCCTGCTTCCATAAACTTCATGGAGATCTCAAGAGGGTCATCAGACCCTGGCATTCTGATATATGTCGCGGACATGATTGAACTCACTGATGACATATCAGTCACATTGGATAGGGATGAAGGAGTACATACAGCCACTGTTAAAGACAAGGAAGTCATGGACATGAGAGACAAAGTTACTGACTCATTCCAAACCTATGTGGCAGAAAATAGTGATGGTATTACTCTCAAAAGAACAATGGCACTCTCAACCATCAATAACATGCCTCAAGATATCTGTGTTTTAGCAGAGGACTTGATGATTGCCCTCATTATACTACCATTCCATAGGAGCCACCGCTCCGAAGGAACCTTCGATGGTGGTAATCAAGGGTTCAGATATGTGAACCGAAAGGTACTGAGAGGTGCCCCTTGTTCCGTTGGGATTCTAGTGGACAGAGGCCTTGGATCCATTGATCATATATCAGCATCTCAAGTAACAATCAATGTGGCAGTCATATTCATTGGAGGGAAAGATGATAGGGAAGCACTTGCCTATGCTAGCCGTGTAGCACGGCATCCAGGAGTAAAAGTCACAATAATAAGATTGTTGGTAGATCCAAATGCAGAGTCCTCAAGATTAGTGAGGTATAGGGTCATCCATGAAGAAGAAGAAAATGAGATGAAGTTGGATGATGAATATTTTGCGCATTTCTATGAAAGGCATGTAGTAGGAGGCCGTATTTCGTATACAGAGAAGCATCTAGCAAATGCTGCTGAGACATTTTCTACTCTCAGGTCATTTGAAGGGCAATACTCATTGGTCATTGTTGGAAGAGAAGGAGGAATGAACTCTATATTGACAAGGGGAATGAATGATTGGCAGCAATGCCCTGAACTAGGACCAATAGGGGATGTTCTTTCAGGACCAGACTTCTCAATGACTGTCTCTGTGTTGATCATCCAACAACACAAAATTAAAGGAGATCTTGATGGATTAGATGATGACTTCTCTATCATGTAG 3483 0.4065 MSPPHTIILSLFIIFISFDLSFGFYIEDKHYQTNYQHYTTTAPTRLMRMTHMSQQMVNVDNYGAIANDGRDDTEAFEKAWNEACSIGAILVVPEKRVYHLKPITFSGPCQPNTAFKVYGTIKAWPHMSAYEKDRRIWIMFDSIMNLVVDGGGIINGNGRKWWQNSCKVNKSLPCKEAPTAVTFYQCNNLQVKNLKFKNAQQMHVRFQKCFNVRASNLLVKAPGNSPNTDGIHITGTQNMIISNSIIGTGDDCISIVSGSKNIRAIGITCGPGHGISIGSLGADNSKAEVSNVIVNRATLTGTTNGVRIKTWQGGYGYATNIKFMNMAMRNVTNPIIIDQNYCDQKEPCQEKESAVALSNVVYQNIRGTSASEVAIKFECSKTVPCRGIYMQNVILTPEDGDGISATWLPEGSSDCGEKLASLIFEVFINFAVFLTMVILCNGLHFILKPYSQPRITSDIIAGLALGNIGHVRTLFDSFNKAFGFIIDFGMMCYMFALGIEMDSHVLFNHLPRQTKAAYGGQIFTFVLTALATPFLAYFDENKILEFTLCLALAVSSTASPVLTRLITHLKIGKSDIGKIVIAGGMHSDFIASLFLSIGYIFVPMALFCGDFQATQGLNKAFTMAGAVLGQTVFAASFGPFFMNWINNENPEGRPMKGVCLPREGRVSKWVITKINYMLTTIFFPIFFLWMGYEADFNKFHFRSRGAWAKFFTLIIVGTAGKIAGTVISGTMLGFHWPESVAIGLLLITKGHLHIYLAVKSMNCGANTSTGIGMIIAIFFTVVQGPTVVANIIKRARKRAPSHHMALQLLDPTSELRILLCLHGLHNIPASINFMEISRGSSDPGILIYVADMIELTDDISVTLDRDEGVHTATVKDKEVMDMRDKVTDSFQTYVAENSDGITLKRTMALSTINNMPQDICVLAEDLMIALIILPFHRSHRSEGTFDGGNQGFRYVNRKVLRGAPCSVGILVDRGLGSIDHISASQVTINVAVIFIGGKDDREALAYASRVARHPGVKVTIIRLLVDPNAESSRLVRYRVIHEEEENEMKLDDEYFAHFYERHVVGGRISYTEKHLANAAETFSTLRSFEGQYSLVIVGREGGMNSILTRGMNDWQQCPELGPIGDVLSGPDFSMTVSVLIIQQHKIKGDLDGLDDDFSIM 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1591 1160 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Lal11g1591 1160 PANTHER CATION/H + ANTIPORTER 415 657 - -
Lal11g1591 1160 PANTHER CATION/H + ANTIPORTER 655 1158 - -
Lal11g1591 1160 Pfam Glycosyl hydrolases family 28 90 397 IPR000743 GO:0004650|GO:0005975
Lal11g1591 1160 CDD USP_Like 989 1101 - -
Lal11g1591 1160 SUPERFAMILY Pectin lyase-like 46 405 IPR011050 -
Lal11g1591 1160 Pfam Sodium/hydrogen exchanger family 657 787 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lal11g1591 1160 Pfam Sodium/hydrogen exchanger family 432 640 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lal11g1591 1160 Gene3D - 428 658 IPR038770 -
Lal11g1591 1160 Gene3D - 843 1113 - -
Lal11g1591 1160 PANTHER CATION/H+ EXCHANGER 3 655 1158 - -
Lal11g1591 1160 PANTHER CATION/H+ EXCHANGER 3 415 657 - -
Lal11g1591 1160 SMART pbh1 236 257 IPR006626 -
Lal11g1591 1160 SMART pbh1 209 235 IPR006626 -
Lal11g1591 1160 SMART pbh1 289 310 IPR006626 -
Lal11g1591 1160 Gene3D - 41 420 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1591 Lal-Chr11 18892887 18901202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1591 425 1160 Antiporter Super Family AT3G52080 46.242 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1591 - - cam:101501359 1043.88