Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1584 ATGACAACCCACTTAAAAGAAGAAATCCCTGAAATCCTTCAAAACCATGGTAATAGCATAGCTGGAAAGCATATGAGGAAACCTGATCTGATGGTAGGAAAAGACATGATGAACAACAGCAACAACATTAAGAGCAAGGATGTTGGAGTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTGCTAAGGTACATGATAAGTAAAGGACAAGGATGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAGAGGTGTGGTAAAAGCTGTCGCCTTCGTTGGATTAATTACTTGAGACCAGATCTTAAGAGAGGTGCATTTTCTCCACAAGAACAACACCTCATCATTCATCTCCACTCCATTCTTGGCAATAGATGGTCTCAAATTGCAGCACGTCTCCCAGGACGTACAGACAATGAGATCAAGAATTTTTGGAACTCCACGGTGAAGAAAAGATTGAAAACTAATAGTGACTCATGTGAGTCTAGAGATCAAGTTTTGGGTTGTGAGAATGGGATCATGCCCATTAATGAACTCATGACCATGTGCATGGATTCATCTTCTACAACTTCATCCTCCATGCATGATATGGTTTTAACTCATGACCAGCAGTTTGACCCATTTCCCATGTTGACAAATAGTTATGACATGGTAGATGGGGTTGATGGTGATTATGGAATATTGGAGAGTAATAAAATGGGGCTAGAAAGAGACTTTTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAAATGAAAACAATAGTGCCCCTATTGATGTGAAAAGCCATAACAACCACTTCAATAATATTTGCATCAATAACACTGAACAGATTCAGAATTCACACGTAGAGGACTTGTTTGGGTTTGGAAACCATGGGCATGGGGAAAACTTAAGAATGGGAGAATGGGACTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCATCCCCCAATTTCCAATTTTAA 972 0.4033 MTTHLKEEIPEILQNHGNSIAGKHMRKPDLMVGKDMMNNSNNIKSKDVGVRKGLWSPEEDEKLLRYMISKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQHLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKTNSDSCESRDQVLGCENGIMPINELMTMCMDSSSTTSSSMHDMVLTHDQQFDPFPMLTNSYDMVDGVDGDYGILESNKMGLERDFSLPSLESRSIENENNSAPIDVKSHNNHFNNICINNTEQIQNSHVEDLFGFGNHGHGENLRMGEWDLEGLMQDISYFPSPNFQF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1584 323 Gene3D - 52 104 - -
Lal11g1584 323 PANTHER MYB DOMAIN PROTEIN 55 25 322 - -
Lal11g1584 323 Pfam Myb-like DNA-binding domain 105 148 IPR001005 -
Lal11g1584 323 Pfam Myb-like DNA-binding domain 52 99 IPR001005 -
Lal11g1584 323 Gene3D - 106 168 - -
Lal11g1584 323 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Lal11g1584 323 CDD SANT 107 150 IPR001005 -
Lal11g1584 323 ProSiteProfiles Myb-like domain profile. 47 99 IPR001005 -
Lal11g1584 323 SMART sant 104 152 IPR001005 -
Lal11g1584 323 SMART sant 51 101 IPR001005 -
Lal11g1584 323 SUPERFAMILY Homeodomain-like 49 146 IPR009057 -
Lal11g1584 323 PANTHER TRANSCRIPTION FACTOR MYB83 25 322 - -
Lal11g1584 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Lal11g1584 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 99 IPR017930 -
Lal11g1584 323 CDD SANT 55 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1584 Lal-Chr11 18842977 18845818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1584 25 322 MYB Transcription Factor Family AT3G08500 44.798 1.83e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal11g1584 Myb_DNA-binding 7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1584 K09422 - gmx:100784755 384.8