Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal11g1583 | ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGAGGAGCATGTTTGAAAGGGGATCAATGTAATTTTTCTCATGAGAGTAAGGATACTCCGACTGATATTTGCTCATTCTATCAGAAAGGATTATGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAACGCTTCTGAAGCATCATCCTCAGAAAATGGACACCAACCTTTGGCTTCTGATTCTGCTGTGGCTCGCACTACTGAAGGAACATCAAGTGGGATTCCAAACACTACGAATTTATCTTCATCTGATGAGTGTGCAAGGAATTCACAACGAAAGCAGATTGATAATGTTGGTGAATCCAGTACTAGAGGTGATATACCATCTGAGCATTTCTTTTGTCAGTTCTCCGCTGCTACCTGCCCCCTAGGAGATAAATGTTCTCGTGTGCATGGAAATAAATGTTTATACTGTAAAAAACATTGCTTGCATCCTACTGATCGAAAGAAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTGAGGCTTTGAAAAATAGTCAAGAAATAGAATGCAATGTTTGTCTTGATCGTGTTCTTTCCAAACCTAAACCAGCTGAATGTAAGTTTGGGGTGCTTCCTGAATGCAACCATGCTTACTGTCTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGATTTGACATGAGTAATAATAATGCTAATACAGTGAGAACCTGTCCTGTTTGCCGCAAACTATCATATTTTGTCATCCCTAGTGATATTTGGTATTCTACTAATGAAGAAAAACTTGAAATTATTGACAACTACAAAGCAAACTGCAGGTTGATTGATTGCAAGCATTTCAACTTTGGGAATGGGAGCTGTCCATTTGGGAGTATTTGTTTCTACAAGCATACTGTGAAGCCTGGCTCATACTCTTGGATACATAACAGACCACCACCTCAACGTAGACCTAACAATTATGATATGTATGACATGTTGGATATGCTCAGCGAAGTTGATTTATCAAGTGGGGAGCTTTATTCTGTCATGAGGGGGTCTGGGCTTTATAATGATATGGATCCATTTGAGATGATGGCTATATCCGATGCAATGGCCAGTGGGGATGGTCCTTGTTTTGGTCCTTTTGATTCTGATGTTGATGATGATGAAGAAGTAGACATGGATTTTTTCCGGATGACTTCTTTGTCAGAGGCATTAGCGTCTGGTGAGGACGACTTTGGCCCTGAAGATTTTGAAAATGATGAAATGGGTCGTATGGAGGCAGCATTGTTATCAATGATGATGCATTCTAATATTGAAGAAGAGGAGGAAGAAGAATACAGTGATGAATACTTATTAAATTAA | 1365 | 0.3963 | MSNRVCKFYARGACLKGDQCNFSHESKDTPTDICSFYQKGLCAYGSRCRYKHVNASEASSSENGHQPLASDSAVARTTEGTSSGIPNTTNLSSSDECARNSQRKQIDNVGESSTRGDIPSEHFFCQFSAATCPLGDKCSRVHGNKCLYCKKHCLHPTDRKKKENHLRTCEKKEKYLEALKNSQEIECNVCLDRVLSKPKPAECKFGVLPECNHAYCLSCIRNWRNSAPTSGFDMSNNNANTVRTCPVCRKLSYFVIPSDIWYSTNEEKLEIIDNYKANCRLIDCKHFNFGNGSCPFGSICFYKHTVKPGSYSWIHNRPPPQRRPNNYDMYDMLDMLSEVDLSSGELYSVMRGSGLYNDMDPFEMMAISDAMASGDGPCFGPFDSDVDDDEEVDMDFFRMTSLSEALASGEDDFGPEDFENDEMGRMEAALLSMMMHSNIEEEEEEEYSDEYLLN | 454 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal11g1583 | 454 | Gene3D | - | 31 | 102 | - | - | |
| Lal11g1583 | 454 | MobiDBLite | consensus disorder prediction | 59 | 99 | - | - | |
| Lal11g1583 | 454 | ProSitePatterns | Zinc finger RING-type signature. | 211 | 220 | IPR017907 | - | |
| Lal11g1583 | 454 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 253 | IPR013083 | - | |
| Lal11g1583 | 454 | SUPERFAMILY | RING/U-box | 175 | 255 | - | - | |
| Lal11g1583 | 454 | Pfam | RNA-binding, Nab2-type zinc finger | 283 | 304 | - | - | |
| Lal11g1583 | 454 | Pfam | RNA-binding, Nab2-type zinc finger | 125 | 143 | - | - | |
| Lal11g1583 | 454 | ProSiteProfiles | Zinc finger C3H1-type profile. | 28 | 55 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | PANTHER | MAKORIN-RELATED | 1 | 450 | IPR045072 | - | |
| Lal11g1583 | 454 | SUPERFAMILY | CCCH zinc finger | 3 | 25 | IPR036855 | GO:0046872 | |
| Lal11g1583 | 454 | PANTHER | MAKORIN RING-ZINC-FINGER PROTEIN | 1 | 450 | - | - | |
| Lal11g1583 | 454 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 4 | 24 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 31 | 53 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | ProSiteProfiles | Zinc finger C3H1-type profile. | 278 | 307 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 249 | IPR001841 | - | |
| Lal11g1583 | 454 | Gene3D | - | 1 | 30 | - | - | |
| Lal11g1583 | 454 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 27 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | SMART | ring_2 | 187 | 248 | IPR001841 | - | |
| Lal11g1583 | 454 | SUPERFAMILY | CCCH zinc finger | 29 | 52 | IPR036855 | GO:0046872 | |
| Lal11g1583 | 454 | Pfam | Zinc finger, C3HC4 type (RING finger) | 187 | 248 | IPR018957 | GO:0046872 | |
| Lal11g1583 | 454 | CDD | RING-HC_MKRN | 187 | 249 | - | - | |
| Lal11g1583 | 454 | SMART | c3hfinal6 | 2 | 26 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | SMART | c3hfinal6 | 28 | 54 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | SMART | c3hfinal6 | 278 | 306 | IPR000571 | GO:0046872 | |
| Lal11g1583 | 454 | SMART | c3hfinal6 | 120 | 144 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal11g1583 | Lal-Chr11 | 18833985 | 18840450 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Lal11g1583 | zf-C3HC4 | 6.4e-06 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal11g1583 | K15687 | - | gmx:100788886 | 668.692 |