Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1578 ATGGTTCGCTCCAATGGCGTCAAACTTCTTCACCGCTTTGCTCGTCGATCTCTCCCCACAGACAAATCCATATGTGAAACAATGTTCCGAAAGGGTTATAGGACATTGAATTGGGGACTTTGCAATCCATCTACCGTTATCGGAAATCGTTCTTCAGATGTTGGATATGGTGTTATCTTGAAGAATTGGTTGCTATCTGGAGCAGCAAATACATATTGGAGGGCATCTAGGTCTATTCACGGCTCTGCACCATTGGCAAAAGATTTTTACGATGTTCTTGGTGTGAGTAAGAACTCTAGTGCTTCTGAAATAAAGAAAGCATATTATGGGCTTGCAAAGAAGCTACATCCAGACACAAACAAAAATGATCCTGAGGCTGAGAAGAAGTTTCAAGAAGTATCGTTGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGAAGGAAATGGCGGCTTTAATCCGTTTGAGCAGATATTTCGTGACCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATCGGCGGAGAGGATGTCAAGGCATTCATTGAATTATCCTTTATGGAAGCTGTTCAAGGATGCACTAAAACTGTTACATTTCAAACAGATTTACTTTGTAATACTTGTGGAGGGAGTGGCGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGCGCAGGAGTGACATATGTACAAGCTGGTCCATTTAGAATGGAGCATACTTGTGGTACATGCAAAGGAACTGGCAAAATCGTATCGGAGTTTAGATATGATGGACTTAACTGTGATTCTACGAATTACAGACAGGAATGCATGCCCTCCCGATGCCCCACTAGGTGGGAGCCTCATAGTTTCTGCAAGTCATGCAGGGGTGCGAAGGTTATGAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATGGACACCAATGAGACCCTAAAGGTTTACAGAAGTGGCGGAGCAGATCCAGATGGAGATCACCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTTTTCCGTAGAGAAGGGTCTAATATTCATGTAGATGCTGTTTTGAGTATCACTCAGGCAATTTTAGGTGGAACCATTCAAGTCCCTACTCTTACTGGAGATGTTGTTCTTAAGGTTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGAATCAAGACAAAAAATTCTTACAGTTTTGGAGATCAATATGTTCATTTTAATGTCAGCATCCCCACAAATCTGACAGAGAGGCAGCGTGAATTGATAGAAGAGTTTTCCAAGGAAGAGCAAGGTGAATGTGATAAACAGAAAGCTGCTTCAGCTTCAGGTTGA 1419 0.4257 MVRSNGVKLLHRFARRSLPTDKSICETMFRKGYRTLNWGLCNPSTVIGNRSSDVGYGVILKNWLLSGAANTYWRASRSIHGSAPLAKDFYDVLGVSKNSSASEIKKAYYGLAKKLHPDTNKNDPEAEKKFQEVSLAYEVLKDEEKRQQYDQVGHDAYVNQQSTGFEGNGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKAFIELSFMEAVQGCTKTVTFQTDLLCNTCGGSGVPPGTRPETCKRCKGAGVTYVQAGPFRMEHTCGTCKGTGKIVSEFRYDGLNCDSTNYRQECMPSRCPTRWEPHSFCKSCRGAKVMKGTKSVKLDIMPGMDTNETLKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYSFGDQYVHFNVSIPTNLTERQRELIEEFSKEEQGECDKQKAASASG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1578 472 ProSitePatterns Nt-dnaJ domain signature. 130 149 IPR018253 -
Lal11g1578 472 SUPERFAMILY Chaperone J-domain 87 189 IPR036869 -
Lal11g1578 472 Pfam DnaJ domain 88 150 IPR001623 -
Lal11g1578 472 Gene3D - 361 470 - -
Lal11g1578 472 CDD DnaJ_zf 224 275 IPR001305 GO:0031072|GO:0051082
Lal11g1578 472 SMART dnaj_3 87 145 IPR001623 -
Lal11g1578 472 SUPERFAMILY HSP40/DnaJ peptide-binding domain 365 451 IPR008971 GO:0006457|GO:0051082
Lal11g1578 472 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 275 IPR036410 -
Lal11g1578 472 CDD DnaJ_C 315 443 - -
Lal11g1578 472 Gene3D - 224 314 - -
Lal11g1578 472 Gene3D - 197 356 - -
Lal11g1578 472 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 30 277 - -
Lal11g1578 472 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 304 472 - -
Lal11g1578 472 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
Lal11g1578 472 Pfam DnaJ central domain 224 274 IPR001305 GO:0031072|GO:0051082
Lal11g1578 472 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 30 277 - -
Lal11g1578 472 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 304 472 - -
Lal11g1578 472 SUPERFAMILY HSP40/DnaJ peptide-binding domain 196 361 IPR008971 GO:0006457|GO:0051082
Lal11g1578 472 CDD DnaJ 88 142 IPR001623 -
Lal11g1578 472 Gene3D DnaJ domain 85 196 IPR036869 -
Lal11g1578 472 PRINTS DnaJ domain signature 90 108 IPR001623 -
Lal11g1578 472 PRINTS DnaJ domain signature 108 123 IPR001623 -
Lal11g1578 472 PRINTS DnaJ domain signature 125 145 IPR001623 -
Lal11g1578 472 PRINTS DnaJ domain signature 145 164 IPR001623 -
Lal11g1578 472 ProSiteProfiles dnaJ domain profile. 88 153 IPR001623 -
Lal11g1578 472 Hamap Chaperone protein DnaJ [dnaJ]. 85 468 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lal11g1578 472 Pfam DnaJ C terminal domain 201 440 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1578 Lal-Chr11 18806101 18812602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1578 90 150 C2H2 Transcription Factor Family AT1G74250 45.455 1.11e-07 52.4