Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1576 ATGGCGCAGGCGAAGGAGAGAACCCCAAGAGTGAGTAGGAACCCTGATTTGATTCGGGGAATTGGAAAGTATTCACGCTCTCAGATGTACCACAAGAGGGGTATCTGGGCCATCAAGGCAAAAAACGGCGGCGTTTTGCCCCGTCATGACCCTAAGCCCAAGCCCGAAGCTAAGCCTGAGAAGTCACCCAAGTTCTACCCCGCAGATGATGTCAAGAAGCCTCTTCTTAATAAGCATAAGCCAAAGCTCACAAAGCTTAGGGCTAGCATTACTCCTGGGACAGTGCTGATTTTGCTTGCCGGGAGATTTAAGGGAAAGAGGGTTGTTTTCTTGAAGCAGCTTCCCTCTGGGTTGCTACTTGTCACAGGTCCTTTTAAGATCAATGGGGTTCCTCTAAGAAGAGTGAACCAATCGTATGTCATCGGTACATCCACCAAGGTTGATATCTCTGGGGTTAATGTTGATAAATTTGATGACAAGTATTTTTCCAGGGCAACCCAGAAAAAGAAAACGAAGGGAGAAGGCGAGTTCTTCGAGGCTGAGAAGGAGGAGAAAAATGTGTTCCCTCAAGAGAAAAAGGATGCCCAAAAAACTGTGGACAGCACTTTACTAAAAGCCATTGAAAGTGTTCCTGACCTGAAATCTTATCTGGGTGCTAGGTTTTCTTTGAAAGCAGGAGTGAAGCCTCATGAGCTAGTTTTTTAG 705 0.4624 MAQAKERTPRVSRNPDLIRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPEAKPEKSPKFYPADDVKKPLLNKHKPKLTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFSRATQKKKTKGEGEFFEAEKEEKNVFPQEKKDAQKTVDSTLLKAIESVPDLKSYLGARFSLKAGVKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1576 234 PANTHER 60S RIBOSOMAL PROTEIN L6 4 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lal11g1576 234 Pfam Ribosomal protein L6, N-terminal domain 4 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
Lal11g1576 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lal11g1576 234 MobiDBLite consensus disorder prediction 41 71 - -
Lal11g1576 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Lal11g1576 234 MobiDBLite consensus disorder prediction 45 71 - -
Lal11g1576 234 Gene3D - 88 172 IPR014722 -
Lal11g1576 234 CDD KOW_RPL6 82 234 IPR041997 -
Lal11g1576 234 PANTHER 60S RIBOSOMAL PROTEIN L6 4 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1576 Lal-Chr11 18798927 18801077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1576 4 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.087 1.39e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1576 K02934 - gmx:100784101 382.489