Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1574 ATGGAGATTAATTTGAATGAAGAGCCATTAAACGATATAGAAGAGCGTATTAGACGCCTTGAAGGGGTAATTTTTAGAGCTAGGCAGCGTCAGAGGTGGAGACAGAATCACACTCCAAATCAAATAACTAACTTTGCAGGAGAGTTGATAACAACAACTAATGTTCAAGATGGTGGTAGGGTGCGCCAAGAAGAGGTTGGGATTGATGCTGAAGTTGGAACTGCCGATTATGGCAGAATTGGCAAAAGGAAAGCTACTTACTTAATTGCCAACGCATTGAAGGCTGAAACGTATACCAATAAGGCACAGGGGTGTGGTGGAAATTTCTTTGATTGTAATATATGCTTGGGCATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCACCTGTTTTGCTGGCCATGCTTTTCTCAGTTGTCATATGCTTATTTGGAAGCAAAGGAATGTCCAGTATGTAAAGGAGAGGTCACCGAAACTGGCATTACCCCGATTTATGGCAATGGAGATGCCAATAACAGTATTCAGTTGGAATTGGAAGCAACTGGTTTCAGAGTTCCTTCTCGACCCCATGCACGTAGAGTTGAGAGTTCATTGGAGAAGTCTAATTGGAATGTGAAAGTATTTATATCGTAG 633 0.4218 MEINLNEEPLNDIEERIRRLEGVIFRARQRQRWRQNHTPNQITNFAGELITTTNVQDGGRVRQEEVGIDAEVGTADYGRIGKRKATYLIANALKAETYTNKAQGCGGNFFDCNICLGMARDPVLTCCGHLFCWPCFSQLSYAYLEAKECPVCKGEVTETGITPIYGNGDANNSIQLELEATGFRVPSRPHARRVESSLEKSNWNVKVFIS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1574 210 SMART ring_2 112 152 IPR001841 -
Lal11g1574 210 CDD RING-HC_AtRMA_like 110 154 - -
Lal11g1574 210 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 197 - -
Lal11g1574 210 Coils Coil 10 30 - -
Lal11g1574 210 SUPERFAMILY RING/U-box 109 162 - -
Lal11g1574 210 ProSiteProfiles Zinc finger RING-type profile. 112 153 IPR001841 -
Lal11g1574 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 203 IPR013083 -
Lal11g1574 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 197 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal11g1574 210 Pfam Zinc finger, C3HC4 type (RING finger) 111 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1574 Lal-Chr11 18779578 18782678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1574 93 196 C3H Transcription Factor Family AT3G58030 54.808 4.61e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1574 K10666 - gmx:100778919 218.009