Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1565 ATGAAGTATGTGTTAGTGACAGGTGGTGTTGTTAGTGGACTTGGGAAAGGAGTCACTGCTAGCAGTATTGGGGTTCTCCTTAAGGCCTGTGGTCTTAGAGTTACTTCTATCAAGATTGATCCCTACTTGAACACTGATGCAGGGACTATGTCTCCTTTTGAGCATGGCGAGGTCTTTGTCTTAGATGACGGCGGTGAGGTTGACCTTGACCTTGGGAACTATGAACGTTTCTTGGACATCAAATTAACCCATGATAACAATATCACTACTGGAAAAATATATCAGGCTGTTATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACTGTCCAGGTTGTTCCACACATAACAGATGCTATCCAAGACTGGATAGAGCGTGTTGCAAGGATACCAGTTGATGGGAAAGAAGGGCCAGCTGATGTTTGTGTCATCGAATTGGGTGGAACTATAGGGGATATTGAGTCTATGCCTTTTATTGAAGCACTTGGCCAATTTTCGCACCGTGTAGGCCATGGCAACTTTTGTTTGATACATGTCAGTCTGGTTCCTGTACTCAATGTTGTTGGTGAACAGAAAACAAAGCCAACTCAGCACAGTGTTCGGCAACTTAGAGGATTAGGTTTGACACCTAATCTTCTTGCTTGTCGCAGTACAAAGGAACTTGATTACAGCGTTAAGGCAAAACTTGCTCAATTTTGTCATGTGCCGTTGTCAAACATAGTTACTCTGCATGATGTTCCAAATATTTGGCACATTCCTTTGCTATTAAAAGATCAGAAGGCGCATGAGGCAATCCTGAAAACATTAAACTTGCTAAGTGTTGCTACAGAGCCTATTTTGAAGGACTGGACCACTAGGACAAAAGTTCACGATGACTTTCATGAAAATGTTAGAATTGCGATGGTGGGAAAATATACTGGCCTTTCTGATGCATATCTTTCTGTTCTGAAGGCACTTTTACATGCTGCTGTCGCTCACAACCGTAAACTTATTGTGGAGTGGGTTCCAGCTGGAGATCTTGAAGATGTTACTTCTAAACAGGATCCTGATTCATATAAAGTTGCCTGGGGACTTCTGAAGGGTGCTGATGGTATTCTAGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAGGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAAAATAATGTCCCATTTCTCGGCATTTGCTTGGGAATGCAAATTGCTGTCATTGAGTTTGCACGATCTATCCTTGGTCTGCATGATACTACTAGTACAGAATTTGATCCTGAAGCCAAGAACCCTTGTGTCATATTTATGCCAGAAGGTTCAAAGACTCATATGGGAGGAACTATGCGTCTTGGTTCAAGGAGAACTTATTTCCAAGTAGCTGAGTGCAAATCTTCAAACTTGTATAGTAATGTAAGCTTTGTTGATGAGCGACATCGGCATAGATATGAGGTTAACCCTGACATGATATCACAGCTGGAGAGTGCTGGTCTATCTTTTGTCGGCAAAGATGAAACTGGGAGTCGCATGGAGATAGTTGAGTTGCCTAGCCATCCTTTTTTTATTGGCGTGCAATTTCACCCGGAGTTCAAGTCCAGACCAGGGAAACCTTCTCCCCTCTTCTCAGGACTAATAGCAGCAGCATGTGAAGTGAAGAGGACAGTTATGTCACCAAGCTATGGCCAAACCAAGTTAACTAATGGATCATATAATGGACACTCACCAACACTGAAATCACACCAAAATGGAAAGGGTTCCAATACAACCAATGATTCCTTAAATGGAGATGAAATGACTCGAGTAATTTGGAAAATGATAAAAGATAAGCTTATTTTTCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCCCATCGGGATGCCACTGATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTGAAGTATAATGTTGCAATCAAATGTGCAACTATAACTCCAGATGAAGGTCGTATGACGGAGTTTAATTTAAAACAAATGTGGAGGAGCCCAAATGGGACAATCCGGAACATTTTAAATGGCATCCAGCTGAACATTCAATCTCTATGTCTTACAGGTACTGTATTTAGAGAGCCGATTATCTGTAAAAACATTCCTCGGCTTGTGTCAGGCTGGACAAAGCCAATATGCATCGGAAGGCATGCTTTTGGAGACCAATATCGGGCAACTGATGCAGTTATAAAAGGCCCTGGAAAGCTGAAGTTGGTTTTTGTACCCAATGGACATGAAGATACTACAGAGCTAGAGGTCTACAACTTCACTGGTGCTGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCATCAATGAACTTTGCTTACCAAAAAAGATGGCCTCTATATCTTAGCACTAAAAATACCATTTTGAAAAAATATGATGGAAGATTCAAGGACATTTTTCAAGAAGTATTTGATGCTCAATGGAGTCGCAAGTTCAAAGATGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCATATGCTGTTAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAGAGTGATTTCTTAGCTCAAGGATTCGGTTCTCTTGGATTGATGACTTCAGTGCTGGTTTGTCCTGATGGGAAAACCATTGAAGCAGAGGCAGCTCATGGCACTGTTACCCGTCACTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATAGCATCAATTTTTGCCTGGTCGCGAGGTCTTGCACATAGGGCAAAGTTAGATAGAAATGCTACATTGTTGGACTTCACAGAGAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCTCTTCTTGTTCATGGACCTAAGGTTTCTAGGTCCCAGTATTTGAACACTGAAGAGTTCATTGATGCTGTAGCTGAGGATCTTAGATCAAGACTATCTACAAAAGCAAAGCTGTAA 3015 0.4189 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTHDNNITTGKIYQAVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSHRVGHGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRQLRGLGLTPNLLACRSTKELDYSVKAKLAQFCHVPLSNIVTLHDVPNIWHIPLLLKDQKAHEAILKTLNLLSVATEPILKDWTTRTKVHDDFHENVRIAMVGKYTGLSDAYLSVLKALLHAAVAHNRKLIVEWVPAGDLEDVTSKQDPDSYKVAWGLLKGADGILVPGGFGDRGVQGKILAAKYARENNVPFLGICLGMQIAVIEFARSILGLHDTTSTEFDPEAKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQVAECKSSNLYSNVSFVDERHRHRYEVNPDMISQLESAGLSFVGKDETGSRMEIVELPSHPFFIGVQFHPEFKSRPGKPSPLFSGLIAAACEVKRTVMSPSYGQTKLTNGSYNGHSPTLKSHQNGKGSNTTNDSLNGDEMTRVIWKMIKDKLIFPYLELDIKYFDLGLPHRDATDDRVTIESAEATLKYNVAIKCATITPDEGRMTEFNLKQMWRSPNGTIRNILNGIQLNIQSLCLTGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPNGHEDTTELEVYNFTGAGGIALSMYNTDESIRAFAEASMNFAYQKRWPLYLSTKNTILKKYDGRFKDIFQEVFDAQWSRKFKDAGIWYEHRLIDDMVAYAVKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDRNATLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVSRSQYLNTEEFIDAVAEDLRSRLSTKAKL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1565 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Lal11g1565 1004 Pfam Isocitrate/isopropylmalate dehydrogenase 592 990 IPR024084 -
Lal11g1565 1004 PANTHER CTP SYNTHASE 1 574 - -
Lal11g1565 1004 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 861 880 IPR019818 GO:0000287|GO:0016616|GO:0051287
Lal11g1565 1004 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Lal11g1565 1004 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 591 999 IPR004790 GO:0004450|GO:0006102
Lal11g1565 1004 MobiDBLite consensus disorder prediction 564 590 - -
Lal11g1565 1004 PANTHER CTP SYNTHASE 1 574 IPR004468 GO:0003883|GO:0006221
Lal11g1565 1004 SUPERFAMILY Class I glutamine amidotransferase-like 297 550 IPR029062 -
Lal11g1565 1004 Pfam Glutamine amidotransferase class-I 309 544 IPR017926 -
Lal11g1565 1004 Gene3D - 1 292 IPR027417 -
Lal11g1565 1004 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Lal11g1565 1004 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 591 998 - -
Lal11g1565 1004 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Lal11g1565 1004 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Lal11g1565 1004 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Lal11g1565 1004 SMART Iso_dh_2 591 990 IPR024084 -
Lal11g1565 1004 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Lal11g1565 1004 Gene3D - 294 558 IPR029062 -
Lal11g1565 1004 Gene3D Isopropylmalate Dehydrogenase 586 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1565 Lal-Chr11 18690780 18703917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1565 K01937 - gmx:100816167 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1565 11 18690780 18703917 Lal11g1565 11 18690780 18703917 ECH
Lal11g1565 11 18690780 18703917 Lal1g1535 1 17529505 17536617 LSH
Lal1g0641 1 4164111 4178417 Lal11g1565 11 18690780 18703917 PCT