Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1552 ATGTCCATGGAAAATCAAGACCAACATGAGATAAGGTTTTCATGTGAAAACCATCAATTAAGTTTCTCCAATTCTACTTGCTCAAAAGAAAGCAATGAGAAGTTAGAGATTAAACCATACAAAAAGGAAGAAGGAGGATACATAGGAAAGACTCTTGAGAAGGAAGGTATGTCACGAATTAAGAGAGAAAGGAGACAAAAGACAAGAAACTTGTTTTCAACTCTTCATGCTTTGCTTCCACAGCTTCCTTCTAAGGTGAACCAAAAAACCATTGTTAATGAAGCAATAAACTACATCAAAAGTCTAGAGCAGACAGTGCAAAAACTTGAAAAACAAAAACAAGAAAGGCTTCACTCTATTTACAGAAAGGCTTCACTCATAGATGACCATGGATCTTCGAATAACTTGTCATGTGAAATGGTAATGGGAAATCCTTCAAACTCAACCTTAGCCTCAATCCCTCATCAACCTGTGAATGTTAAAACATTGAGTTCTCCAAATGTAGTCTTGAATATTTGTGAGAATGAAGCACAGTTCTTTGTTTACACAAGTAAGAAGCTAGACCTCTTGACTTCCATTGCTTCTGTGCTTGAGAAGTTCAAGATAGAAGTCATGTATGCCAACATTTGGAGCAAAGATGATAAACATGGAGTGATGATTCTAGCTTCTCAGAAAAATATGGTTCCCTCGCATCAGTTTCCAAAGACAATTTCGTTAGGGGAAGTTTACAAGCAAGCTGCTGCAGAGATTAATGCATTGGTCTCCTAA 768 0.3698 MSMENQDQHEIRFSCENHQLSFSNSTCSKESNEKLEIKPYKKEEGGYIGKTLEKEGMSRIKRERRQKTRNLFSTLHALLPQLPSKVNQKTIVNEAINYIKSLEQTVQKLEKQKQERLHSIYRKASLIDDHGSSNNLSCEMVMGNPSNSTLASIPHQPVNVKTLSSPNVVLNICENEAQFFVYTSKKLDLLTSIASVLEKFKIEVMYANIWSKDDKHGVMILASQKNMVPSHQFPKTISLGEVYKQAAAEINALVS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1552 255 CDD bHLH_AtbHLH_like 58 110 IPR045239 -
Lal11g1552 255 Coils Coil 92 119 - -
Lal11g1552 255 Pfam Helix-loop-helix DNA-binding domain 62 103 IPR011598 GO:0046983
Lal11g1552 255 Gene3D - 50 127 IPR036638 GO:0046983
Lal11g1552 255 SMART finulus 58 108 IPR011598 GO:0046983
Lal11g1552 255 PANTHER - 28 252 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lal11g1552 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 122 IPR036638 GO:0046983
Lal11g1552 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Lal11g1552 255 PANTHER TRANSCRIPTION FACTOR BHLH95 28 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1552 Lal-Chr11 18615716 18617276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1552 61 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.361 4.69e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal11g1552 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1552 - - lang:109333868 327.791