Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1550 ATGGAAAGAATGTTCCCTCCTAAGAAGCCCTCTACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGGGACTCGGGTCTTGTCCTTACAACTGACCCAAAACCTCGCCTACGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCAGATAAGGCAACTCCTAAAACCATCATGAGAGTTATGGGTGTGAAGGGTCTCACCCTTTACCATCTCAAGAGCCACCTTCAGAACACTTTTGTGACACTGGTGATTTCTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGCTTCAGCTTTAGAGCTGCAACGAAATACTGCCTCCTCTTCTGCCATGATCGGTCGCAACATGAATGATAACTCACACATGGTTGATGCCATTAGGATGCAAATAGAGGTGCAGAGAAGACTGCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCTCAAGGAAAATACATGCAAAGCATATTGGAGAAGGCTTATCAAACACTTGCAGGTGAAAACATGGCATCTGCTGCCACTAACATGAAGGGTATGGTACCTCATCAAGGGATCCCTGACATGGGAGTCATGAAAGAATTTGGTTCCCCTCTTAATTTCTCTTCTTTCCAAGATCTTGACATTTTTGGAGGTGACCAACTTGATCTTCAGCCAAACATGGAGAAACCACCCCTTGATGGGTTTATGCCAATCAATGAAAACTTGTGCCTTGGGAAAAAGAGACCAAACCCTTATAGTGGGAGTGGAAAGAGCCCTTTGATTTGGAGTGATGATCTTAGGCTTCAAGATTTGGGGACAGCCTCATCATGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCAGATTCAACTTGCACCAGCATCAATGGATAGAGGCAGTGAGATTGATCAAATATCAGATATGTATGACACAAAGCCTTCACTTTATGGGGATGAGAAGAAATTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGGACACATCTTCAAGCAGAAAGGATGAGTCCTATGATCAGCACTGGATCCATGGCACAAGGTAGAAGCTCACCATTTGGGTGA 1137 0.4459 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQNTFVTLVISQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNMKGMVPHQGIPDMGVMKEFGSPLNFSSFQDLDIFGGDQLDLQPNMEKPPLDGFMPINENLCLGKKRPNPYSGSGKSPLIWSDDLRLQDLGTASSCLGPQDDPFKGDQIQLAPASMDRGSEIDQISDMYDTKPSLYGDEKKFDASMKLERPSPRRTHLQAERMSPMISTGSMAQGRSSPFG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1550 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 330 IPR044848 GO:0003700
Lal11g1550 378 MobiDBLite consensus disorder prediction 1 20 - -
Lal11g1550 378 MobiDBLite consensus disorder prediction 339 354 - -
Lal11g1550 378 SUPERFAMILY Homeodomain-like 34 89 IPR009057 -
Lal11g1550 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 89 IPR006447 GO:0003677
Lal11g1550 378 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Lal11g1550 378 Pfam MYB-CC type transfactor, LHEQLE motif 141 186 IPR025756 -
Lal11g1550 378 MobiDBLite consensus disorder prediction 359 378 - -
Lal11g1550 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 330 - -
Lal11g1550 378 Gene3D - 34 101 - -
Lal11g1550 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Lal11g1550 378 MobiDBLite consensus disorder prediction 339 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1550 Lal-Chr11 18604443 18606678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1550 4 378 G2-like Transcription Factor Family AT1G79430 54.177 8.09e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal11g1550 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1550 - - ccaj:109805894 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1550 11 18604443 18606678 Lal11g1550 11 18604443 18606678 ECH
Lal20g0512 20 4376965 4379407 Lal11g1550 11 18604443 18606678 LSH